An Online Informatics Resource for Dictyostelium
  Search dictyBase:
use * as a wildcard character
Genome Browser BLAST dictyMart Stock Center Research Tools Help Links Contact Us

Detailed motif information

General information
Motif ID: mDDB0167918db002
Number of genes with the motif: 64
Motif logo

Sequence logos were rendered with the Delila Programs from Schneider Lab.
Nucleotide frequency table
position012345678910
A 67%100% 0% 0% 17% 67% 17% 0% 67% 67% 17%
C 0% 0% 17% 0% 0% 17% 0% 0% 17% 0% 0%
G 33% 0% 83% 67% 83% 0% 0%100% 0% 0% 83%
T 0% 0% 0% 33% 0% 17% 83% 0% 17% 33% 0%
consensusRAGKGATGAWG

Matching with known binding sites

1. best match (score: 1.91)
with TRANSFAC motif: DROME$ADH_06 - Adh (alcohol dehydrogenase)
bound by: Adf-1
          CGACGTCGACGGATGCAGCAGCAGC
                 |+|+++++|++
                 AAGGGATGAAG
                 G CTATA TTA
                      C  C
2. best match (score: 1.71)
with TRANSFAC motif: ASPN$ABAA_06 - abaA
bound by: abaA
          TCAGAGGAATGCAGCGT
             |+++|+++|++
             AAGGGATGAAG
             G CTATA TTA
                  C  C
3. best match (score: 0.93)
with TRANSFAC motif: DROME$ADH_39
bound by: srp
          TAACGGTAGATAAT
           ++|++||++||
           AAGGGATGAAG
           G CTATA TTA
                C  C
Gene expression of all the genes with the motif

Positional distribution of the motif in the regulatory regions of all relevant genes

Links to genes with the motif
Link to results pageLink to detailed gene info
BC4V2_0_00058 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
BC4V2_0_00845 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
BC4V2_0_00892 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
BC4V2_0_01190 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
BC4V2_0_01191 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
BC4V2_0_01523 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
BC4V2_0_01703 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
BC4V2_0_01786 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
BC5V2_0_00257 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
BC5V2_0_00426 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
BC5V2_0_00673 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
BC5V2_0_01454 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
BC5V2_0_01674 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
BEC6V2_0_00234 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
BEC6V2_0_00308 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
BEC6V2_0_00315 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
BEC6V2_0_00817 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
BEC6V2_0_01173 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
BEC6V2_0_01227 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
DG1062 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
JC1V2_0_00545 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
JC2V2_0_00761 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
JC2V2_0_01289 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
JC2V2_0_02282 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
JC2V2_0_02419 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
JC3V2_0_00286 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
JC3V2_0_00724 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
JC3V2_0_00893 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
JC3V2_0_01211 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
JC3V2_0_01294 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
JC3V2_0_01412 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
JC3V2_0_01660 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
JC3V2_0_02176 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
JC3V2_0_02359 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
JC3V2_0_02433 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
JC3V2_0_02449 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
abcB7 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
abpE dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
cdk5 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
forC dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
geneDDB0216331 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
geneDDB0220490 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
geneDDB0229989 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
geneDDB0229996 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
geneDDB0229998 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
geneDDB0230143 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
geneDDB0230144 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
geneDDB0231561 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
geneDDB0231746 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
geneDDB0233097 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
geneDDB0233675 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
geneDDB0234033 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
geneDDB0234092 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
geneDDB0235171 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
geneDDB0238123 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
hmgL dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
nudE dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
nup93 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
pks15 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
rab7A dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
racD dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
sec61a dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
sti1 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
top3 dictyBase Home >> Chromosome 4:146996..149217 >> Gene: DDB_G0283007 >> Regulatory Region
Query for a group of genes. Learn about how the analysis was done.
Return to Home Supported by NIH (NIGMS and NHGRI) Send a Message to the dictyBase Curators