| position | 0 | 1 | 2 | 3 | 4 | 5 | 6 | 7 |
|---|
| A | 0% | 40% | 100% | 0% | 0% | 0% | 20% | 0% |
| C | 60% | 60% | 0% | 80% | 80% | 100% | 80% | 0% |
| G | 40% | 0% | 0% | 0% | 0% | 0% | 0% | 0% |
| T | 0% | 0% | 0% | 20% | 20% | 0% | 0% | 100% |
|
| consensus | S | M | A | C | C | C | C | T |
Matching with known binding sites
1. best match (score: 2.61)
with TRANSFAC motif: AD2$ADML_01 - adenovirus major late promoter
bound by: TBP
CCCACCCCTTTTATAGCCCCCCTT
++++++++
CCACCCCT
GA TT A
2. best match (score: 2.61)
with TRANSFAC motif: HS$EPO_06 - Epo (erythropoietin)
CCCCCTCCACCCCTCGTTT
++++++++
CCACCCCT
GA TT A
3. best match (score: 2.61)
with TRANSFAC motif: MOUSE$THY1_05 - Thy-1 antigen
CCACCCCTG
++++++++
CCACCCCT
GA TT A
4. best match (score: 2.61)
with TRANSFAC motif: HS$GPC_05 - GPC (glycophorin C)
TTTCCACCCCT
++++++++
CCACCCCT
GA TT A
5. best match (score: 2.61)
with TRANSFAC motif: DIDI$CP2_01 - CP2 (pst-cathepsin)
bound by: GBF
AAACCCACCCCTAACTTAACACACCCGCT
++++++++
CCACCCCT
GA TT A
6. best match (score: 2.61)
with TRANSFAC motif: BPV1$BPV1_21 - BPV-1 (bovine papilloma virus-1)
bound by: E2, Sp1
CTCCACCCCTCCTGGTAA
++++++++
CCACCCCT
GA TT A
7. best match (score: 2.55)
with TRANSFAC motif: DROME$VVL_01
bound by: Cf1a
TCGCTAATGATATGCACCCCT
|+++++++
CCACCCCT
GA TT A
8. best match (score: 2.55)
with TRANSFAC motif: QUAIL$PAX6_09 - Pax-6/Pax-QNR (paired box gene 6)
bound by: Pax-6 (Pax-QNR)
ATATTAAGGGAAAGTTAGTGCAAAGGCAGCACCCCTCTTTTATTGTCATTGACATTTAAA
|+++++++
CCACCCCT
GA TT A
9. best match (score: 2.55)
with TRANSFAC motif: RABBIT$UG_16 - Ug (uteroglobin)
bound by: Sp1, Sp3, Sp3
GCACCCCTTGCCACACCCCTG
|+++++++
CCACCCCT
GA TT A
10. best match (score: 2.26)
with TRANSFAC motif: HT1$HTLV1_25 - HTLV-I (human T-cell lymphotropic virus type I)
bound by: HEB1-p67, HEB1-p94, Sp1, Tax
CAGGCGTTGACGACAACCCCT
+|++++++
CCACCCCT
GA TT A
| 
