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Detailed motif information

General information
Motif ID: mDDB0188514db019
Number of genes with the motif: 85
Motif logo

Sequence logos were rendered with the Delila Programs from Schneider Lab.
Nucleotide frequency table
position01234567
A 9% 68% 88% 9% 88% 9% 9% 48%
C 61% 22% 2% 61% 2% 41% 61% 41%
G 2% 2% 2% 2% 2% 22% 2% 2%
T 28% 9% 9% 28% 9% 28% 28% 9%
consensusYAAYAYYM

Matching with known binding sites

1. best match (score: 1.86)
with TRANSFAC motif: MMTV$MMTV_39 - MMTV (mouse mammary tumor virus)
bound by: MAF, NF-1
       AGGACCACAGCCAA
           +|+++|+|
           CAACACCA
           TC T TTC
                G
2. best match (score: 1.81)
with TRANSFAC motif: MOUSE$GSHPX1_04 - GSHPX-1 (cytosolic glutathione peroxidase)

       TGTTTTGCACAGCTGCAACAGCCTTG
                      +++++|+|
                      CAACACCA
                      TC T TTC
                           G
3. best match (score: 1.13)
with TRANSFAC motif: AS$AGL3_12 - artificial sequence.
bound by: AGL3
       GTCGTGCTAATACCCTGCCATTTATGGGTGG
              |++|+|+|
              CAACACCA
              TC T TTC
                   G
4. best match (score: 0.95)
with TRANSFAC motif: MOUSE$HOX23_06 - Hox-2.3 (homeobox gene 2.3)

       GGAGGCCGTCATACCATTGGCCGAGG
               ||+|+|++
               CAACACCA
               TC T TTC
                    G
5. best match (score: 0.84)
with TRANSFAC motif: HS$VIP_01 - VIP (vasoactive intestinal polypeptide)
bound by: ATF-2, c-Fos, c-Jun, CREB, CREB
       GACGTCACAGTATGACG
           ||+++||+
           CAACACCA
           TC T TTC
                G
6. best match (score: 0.79)
with TRANSFAC motif: MOUSE$GLUT2_04 - GLUT2 (glucose transporter 2)
bound by: IPF1
       GACTTAATAATAACAGTA
                 |++++||+
                 CAACACCA
                 TC T TTC
                      G
7. best match (score: 0.63)
with TRANSFAC motif: RAT$CFOS_01 - c-fos
bound by: SRF
       GGATGTCCATATTAGGACATCT
             +|+|+||+
             CAACACCA
             TC T TTC
                  G
8. best match (score: 0.63)
with TRANSFAC motif: MOUSE$CFOS_01 - c-fos
bound by: MHox (K-2), SRE-ZBP, SRF, SRF (504 AA), YY1
       GGATGTCCATATTAGGACATCTG
             +|+|+||+
             CAACACCA
             TC T TTC
                  G
9. best match (score: 0.58)
with TRANSFAC motif: HS$HOXD9_05 - HOXD9
bound by: HOXD10, HOXD10, HOXD10, HOXD9, HOXD9, HOXD9
       AGGCATAATATCATTA
            |++|+|++
            CAACACCA
            TC T TTC
                 G
10. best match (score: 0.50)
with TRANSFAC motif: DROME$ADH_31 - Adh (alcohol dehydrogenase)

       TATAATATACTAATACTAATACTAATACTAATATAAGAATACTAATATAGA
                 |++|+||+
                 CAACACCA
                 TC T TTC
                      G
Gene expression of all the genes with the motif

Positional distribution of the motif in the regulatory regions of all relevant genes

Links to genes with the motif
Link to results pageLink to detailed gene info
BC4V2_0_00222 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BC4V2_0_00415 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BC4V2_0_00565 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BC4V2_0_00680 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BC4V2_0_01523 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BC4V2_0_01583 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BC4V2_0_01617 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BC5V2_0_00126 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BC5V2_0_00246 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BC5V2_0_01370 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BC5V2_0_01420 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BC5V2_0_01426 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BC5V2_0_01690 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BC5V2_0_01694 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BC5V2_0_01695 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BEC6V2_0_00188 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BEC6V2_0_00605 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BEC6V2_0_01168 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BEC6V2_0_01240 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BEC6V2_0_01324 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC1V2_0_00312 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC1V2_0_00314 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC1V2_0_00640 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC1V2_0_00672 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC1V2_0_00694 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC1V2_0_01318 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC2V2_0_00617 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC2V2_0_01365 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC2V2_0_01404 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC2V2_0_01472 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC2V2_0_01922 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC2V2_0_02154 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC2V2_0_02503 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC2V2_0_03148 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC3V2_0_00272 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC3V2_0_00388 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC3V2_0_00480 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC3V2_0_00585 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC3V2_0_00947 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC3V2_0_01433 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC3V2_0_01592 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC3V2_0_01618 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC3V2_0_02011 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
abcG1 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
acpB dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
alrE dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
dstA dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
eIF6 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
expl3 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
gdt9 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
gefQ dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0216387 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0216409 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0230050 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0231588 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0231625 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0232104 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0232385 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0233646 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0234027 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0234155 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0235286 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
gnt10 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
hemA dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
hmgL dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
ifkC dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
limB dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
lkhA dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
manD dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
mhcA dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
nola2 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
noxA dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
orcA dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
phdA dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
pitC dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
pks29 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
prsA dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
ragA dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
repB dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
rngB dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
rpl24 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
rpl26 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
rpl9 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
rsmD dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
trpS dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
Query for a group of genes. Learn about how the analysis was done.
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