Detailed motif information for mDDB0205082db002

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Detailed motif information

General information

Motif ID: mDDB0205082db002
Number of genes with the motif: 60

Motif logo

Sequence logos were rendered with the Delila Programs from Schneider Lab.

Nucleotide frequency table

position	0	1	2	3	4	5	6	7	8	9
A	0%	50%	0%	0%	0%	0%	0%	0%	0%	50%
C	67%	0%	83%	0%	100%	33%	17%	67%	50%	50%
G	33%	33%	0%	0%	0%	0%	0%	33%	0%	0%
T	0%	17%	17%	100%	0%	67%	83%	0%	50%	0%
consensus	S	R	C	T	C	Y	T	S	Y	M

Matching with known binding sites

1. best match (score: 1.85)
with TRANSFAC motif: RAT$POMC_06 - POMC (pro-opiomelanocortin)
bound by: PO-B, PO-B

         TGTCACTCTTCTCT
            ++++++++++
            CACTCTTCTC
            GGT  CCGCA
             T

2. best match (score: 1.21)
with TRANSFAC motif: AS$ISRE_01 - artificial sequence (OL1; artificial ISRE).

         GTTTCTCCTCTACT
         |||+++|+++
         CACTCTTCTC
         GGT  CCGCA
          T

Gene expression of all the genes with the motif

Positional distribution of the motif in the regulatory regions of all relevant genes

Links to genes with the motif

Link to results page	Link to detailed gene info
AY007802	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
BC4V2_0_00389	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
BC4V2_0_00402	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
BC4V2_0_00892	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
BC4V2_0_01150	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
BC4V2_0_01366	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
BC4V2_0_01726	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
BC4V2_0_01781	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
BC5V2_0_00426	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
BC5V2_0_00536	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
BC5V2_0_00667	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
BC5V2_0_01318	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
BC5V2_0_01454	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
BC5V2_0_01650	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
BEC6V2_0_00188	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
BEC6V2_0_00280	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
BEC6V2_0_01324	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
JC1V2_0_00431	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
JC1V2_0_01318	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
JC1V2_0_01405	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
JC1V2_0_01634	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
JC2V2_0_00647	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
JC2V2_0_00734	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
JC2V2_0_00931	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
JC2V2_0_01446	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
JC2V2_0_01534	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
JC2V2_0_01877	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
JC2V2_0_02312	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
JC2V2_0_02315	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
JC2V2_0_02485	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
JC3V2_0_01229	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
JC3V2_0_01405	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
JC3V2_0_01441	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
JC3V2_0_01941	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
ahhA	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
arsA	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
cenA	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
ctxA	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
dhkE	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
eIF3s9	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
esd	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
geneDDB0216422	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
geneDDB0220008	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
geneDDB0232101	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
geneDDB0232319	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
geneDDB0233129	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
glpD	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
hatB	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
ndrC	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
pcp	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
pldZ	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
rab1C	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
rcdM	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
rnrA	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
rpl13a	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
rps7	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
sgcA	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
sgmB	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
tom1	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region
vatH	dictyBase Home >> Chromosome 2:55773..58115 >> Gene: udkD >> Regulatory Region

Query for a group of genes. Learn about how the analysis was done.


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