An Online Informatics Resource for Dictyostelium
  Search dictyBase:
use * as a wildcard character
Genome Browser BLAST dictyMart Stock Center Research Tools Help Links Contact Us

Detailed motif information

General information
Motif ID: mDDB0205417db007
Number of genes with the motif: 64
Motif logo

Sequence logos were rendered with the Delila Programs from Schneider Lab.
Nucleotide frequency table
position012345678910
A 0% 0% 20% 0% 60% 0%100% 80% 40%100%100%
C 40% 60% 80%100% 40%100% 0% 0% 60% 0% 0%
G 20% 0% 0% 0% 0% 0% 0% 0% 0% 0% 0%
T 40% 40% 0% 0% 0% 0% 0% 20% 0% 0% 0%
consensusYYCCMCAAMAA

Matching with known binding sites

1. best match (score: 1.83)
with TRANSFAC motif: Y$MAL61_03 - MAL61-62 (maltose permease-maltase)
bound by: MIG1
          CCCCACAAAAAT
          |+++++++|++
          TCCCACAACAA
          CTA C  TA  
          G
2. best match (score: 1.50)
with TRANSFAC motif: AD$E4_15 - E4 (early gene 4)
bound by: CAP
          AAAAAATGACGTAACGGTTAAAGTCCACAAAAAACA
                                ||++++++|++
                                TCCCACAACAA
                                CTA C  TA  
                                G
Gene expression of all the genes with the motif

Positional distribution of the motif in the regulatory regions of all relevant genes

Links to genes with the motif
Link to results pageLink to detailed gene info
BC4V2_0_00222 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BC4V2_0_00594 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BC4V2_0_01450 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BC4V2_0_01745 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BC4V2_0_01781 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BC5V2_0_00822 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BC5V2_0_01042 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BC5V2_0_01641 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BC5V2_0_01735 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BEC6V2_0_00288 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BEC6V2_0_00309 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BEC6V2_0_01164 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BEC6V2_0_01221 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
BEC6V2_0_01386 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
CYP519D1 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC1V2_0_00693 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC1V2_0_00711 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC1V2_0_01426 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC2V2_0_00939 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC2V2_0_01628 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC2V2_0_02585 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC2V2_0_02817 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC3V2_0_00931 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC3V2_0_01907 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
JC3V2_0_02431 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
agnD dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
cad2 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
cap dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
ctxA dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
dia2 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
eIF3s6 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
eRF3 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
gefC dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
gefD dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0201634 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0220643 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0231138 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0231412 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0231559 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0231673 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0231746 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0232319 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0233501 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0233704 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0235202 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
geneDDB0237697 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
kctd9 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
ksnC dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
lmpB dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
mppB dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
mybN dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
nxnA dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
pckA dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
pcp dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
phr2AB dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
pldZ dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
rabG2 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
rad54b dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
roco8 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
rpl31 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
sec24 dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
sgmB dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
spnA dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
xpot dictyBase Home >> Chromosome 4:564142..569491 >> Gene: DDB_G0283357 >> Regulatory Region
Query for a group of genes. Learn about how the analysis was done.
Return to Home Supported by NIH (NIGMS and NHGRI) Send a Message to the dictyBase Curators