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Detailed motif information

General information
Motif ID: mDDB0218834db016
Number of genes with the motif: 53
Motif logo

Sequence logos were rendered with the Delila Programs from Schneider Lab.
Nucleotide frequency table
position0123456
A 9% 28% 28% 9% 9% 9% 48%
C 22% 2% 2% 2% 2% 2% 41%
G 61% 61% 2% 2% 41% 81% 2%
T 9% 9% 68% 88% 48% 9% 9%
consensusGRWTKGM

Matching with known binding sites

1. best match (score: 2.18)
with TRANSFAC motif: AS$ELK1_02 - artificial sequence (derived from c-fos SRE).
bound by: Elk-1, SRF
      CCTTATATGGACCTTCCGGTTGGCGGTGATGTCTGGTGCTGA
                       ++++|+|
                       GGTTTGA
                       CAA G C
2. best match (score: 2.00)
with TRANSFAC motif: DROME$SALM_14
bound by: Kr
      AAAAGGATGGCACAAATTTC
          ++|+|+|
          GGTTTGA
          CAA G C
3. best match (score: 2.00)
with TRANSFAC motif: DROME$H_08
bound by: KNIRPS
      GACACCGAACTGATTTGAACTGAACGGGTCAGAGGATGGCAGAGC
                                       ++|+|+|
                                       GGTTTGA
                                       CAA G C
4. best match (score: 1.91)
with TRANSFAC motif: AS$AGL3_21 - artificial sequence.
bound by: AGL3
      GTCGATCAATATGTTACCATTTTGGGGTTGGAT
                               ++++|++
                               GGTTTGA
                               CAA G C
5. best match (score: 1.91)
with TRANSFAC motif: CAMV$35SR_02 - 35S RNA
bound by: HBP-1
      AGACGTGGTTGGAACGTCT
            ++++|++
            GGTTTGA
            CAA G C
6. best match (score: 1.90)
with TRANSFAC motif: HS$SMAACT_01 - sm a-actin (smooth muscle alpha-actin)
bound by: p53
      GGGTAATGGGCAGATGCAGGCATGGTTTGCACATTC
                             ++++++|
                             GGTTTGA
                             CAA G C
7. best match (score: 1.90)
with TRANSFAC motif: DROOR$ADH_13 - Adh (alcohol dehydrogenase)

      GTGCCGGTTTGCATT
           ++++++|
           GGTTTGA
           CAA G C
8. best match (score: 1.73)
with TRANSFAC motif: AS$AGL3_44 - artificial sequence.
bound by: AGL3
      GTGTAACATACCATAAATAGGATGGAT
                         ++|+|++
                         GGTTTGA
                         CAA G C
9. best match (score: 1.70)
with TRANSFAC motif: MOUSE$EKLF_01 - EKLF (erythroid Kruppel-like factor)
bound by: AP-1, GATA-1
      ACATCTGATTGGCTGTCT
            +|++|+|
            GGTTTGA
            CAA G C
10. best match (score: 1.70)
with TRANSFAC motif: SP$H2BL1_01 - H2B (histone 2B, late gene)
bound by: H2B abp 1
      TATGATTGGCAGCTT
         +|++|+|
         GGTTTGA
         CAA G C
Gene expression of all the genes with the motif

Positional distribution of the motif in the regulatory regions of all relevant genes

Links to genes with the motif
Link to results pageLink to detailed gene info
BC4V2_0_00700 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
BC5V2_0_00749 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
BEC6V2_0_01378 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
CSN7 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
Ddaco dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
GP138B dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
JC1V2_0_00614 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
JC1V2_0_00656 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
JC1V2_0_00829 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
JC1V2_0_00938 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
JC1V2_0_01037 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
JC2V2_0_00076 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
JC2V2_0_00749 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
JC2V2_0_01740 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
JC2V2_0_02146 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
JC3V2_0_00455 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
JC3V2_0_01840 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
TAF13 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
agnB dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
aprA dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
copB2 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
fray2 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
geneDDB0230162 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
geneDDB0231728 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
geneDDB0232404 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
geneDDB0233078 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
geneDDB0233559 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
geneDDB0235202 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
geneDDB0237794 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
geneDDB0238021 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
gnd dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
pcmA dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
phbA dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
prpD dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
prpf39 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
psaA dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
purA dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
racE dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
racF2 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
rasC dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
rpl30 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
rpl8 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
rps15 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
rps27 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
rps28 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
rps8 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
rpsA dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
scfd1 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
sigL dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
snrpD2 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
vwkA dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
xpo6 dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
yelA dictyBase Home >> Chromosome 4:1832437..1832789 >> Gene: geneDDB0238501 >> Regulatory Region
Query for a group of genes. Learn about how the analysis was done.
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