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The regulatory region of vatM

dictyBase Home >> Chromosome 6:889234..893168 >> Gene: vatM >> Regulatory Region
Regulatory region snapshot
Description of the computationally inferred structure of gene regulatory sequence elements

Motif appears at position -960 to -41 relative to the ATG AND
motif appears at position -880 to -401 relative to the ATG AND
motif appears at position 0 to 39 relative to .

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
TTTGGCC|CACCCCC|GTTTTTT (vatM) in nonsense dir., at pos. -729, p: 1.94e-07
This motif matches the following known binding sites:
  • RAT$PEPCK_22 - PEPCK (phosphoenolpyruvate carboxykinase, cytosolic), bound by: COUP, RAR-alpha1
  • AT$SPA1_01 - SPA1 (phytochrome A supressor), bound by: PIF3
  • see details about this motif
    • Motif appears at these position(s): 
    AAAAAAC|GGGGGTGGGCC|AAAAAAA (vatM) in sense dir., at pos. -729, p: 2.6e-10
    This motif matches the following known binding sites:
  • HS$EPOR_01 - EpoR (erythropoietin receptor), bound by: Sp1
  • AS$CACCC_01 - artificial sequence., bound by: CACCC-binding factor
  • see details about this motif
    • Motif appears at these position(s): 
    TTTGGCC|CACCCCC|GTTTTTT (vatM) in nonsense dir., at pos. -729, p: 9.68e-08
    This motif matches the following known binding sites:
  • AS$PAX4_49 - artificial sequence., bound by: Pax-4a
  • HS$BG_14 - GLOB-B (beta-globin)
  • see details about this motif
    • Explore this gene further
  • List all inferred regulatory region structures that include this gene using pufA- data.
  • Look at genes with similar expression patterns and regulatory domain structure.
  • This regulatory region structure was inferred using pufA- gene expression data. Look at structures inferred using other data (click on the panel with the gene expression of interest below).


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