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The regulatory region of rcnA

dictyBase Home >> Chromosome 2:541649..543599 >> Gene: rcnA >> Regulatory Region
Regulatory region snapshot
Description of the computationally inferred structure of gene regulatory sequence elements

Motif appears anywhere in the regulatory region AND
motif appears anywhere in the regulatory region AND
motif appears anywhere in the regulatory region.

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
GGTACAC|CCACCCTCACA|TTTTTTT (rcnA) in sense dir., at pos. -275, p: 4.3e-09
This motif matches the following known binding sites:
  • DROME$FTZ_03 - ftz (fushi tarazu), bound by: Elf-1
  • AS$ATHB9_16 - artificial sequence., bound by: ATHB-9
  • see details about this motif
    • Motif appears at these position(s): 
    AAAAAAA|TGTGAGGGTGG|GTGTACC (rcnA) in nonsense dir., at pos. -275, p: 1.7e-09
    This motif matches the following known binding sites:
  • MOUSE$AAG_06 - GLOB-AA (alphaA-globin), bound by: GATA-1
  • DROME$ANTP_82, bound by: Ubx
  • see details about this motif
    • Motif appears at these position(s): 
    AACGGTA|CACCCACCCTCACA|TTTTTTT (rcnA) in sense dir., at pos. -278, p: 4.66e-10

    This motif does not match any known binding sites.

    Explore this gene further
  • List all inferred regulatory region structures that include this gene using pufA- data.
  • Look at genes with similar expression patterns and regulatory domain structure.
  • This regulatory region structure was inferred using pufA- gene expression data. Look at structures inferred using other data (click on the panel with the gene expression of interest below).


    • Query for a group of genes. Learn about how the analysis was done.
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