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Structure of the BC4V2_0_01578 regulatory region

Listed are 4 possible structures of the regulatory region inferred using pufA- gene expression data.

Structure #1

Motif appears at position -1000 to -281 relative to the ATG AND
motif appears in sense direction at position -920 to -401 relative to the ATG.

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
AAGGAAC|CCTTCCCCACC|CAACACG (BC4V2_0_01578) in nonsense dir., at pos. -903, p: 1.94e-08
This motif matches the following known binding sites:
  • MOUSE$GLUT2_03 - GLUT2 (glucose transporter 2)
  • HS$CD11B_02 - CD11b (leukocyte (myeloid) integrin CD11b), bound by: PU.1, PU.1
  • see details about this motif
    • Motif appears at these position(s): 
    TCGTGTT|GGGTGGGGAAGGGTT|CCTTTAA (BC4V2_0_01578) in sense dir., at pos. -904, p: 2.58e-11

    This motif does not match any known binding sites.

  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #2

    Motif appears at position -920 to -1 relative to the ATG AND
    motif appears at position -760 to -41 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    TCGTGTT|GGGTGGG|GAAGGGT (BC4V2_0_01578) in sense dir., at pos. -904, p: 9.68e-08
    This motif matches the following known binding sites:
  • DROME$128_04, bound by: Deaf1
  • MOUSE$PAI1_01 - PAI-1 (plasminogen activator inhibitor type 1), bound by: P113
  • see details about this motif
    • Motif appears at these position(s): 
    AAAACCA|AAAAGGGGGG|GGGGAAA (BC4V2_0_01578) in sense dir., at pos. -68, p: 1.02e-08
    This motif matches the following known binding sites:
  • Y$FPS1_01 - FPS1 (glycerol channel protein), bound by: MIG1
  • MOUSE$IGKL_26 - Ig-kappa (immunoglobulin kappa light chain), bound by: POU2F1
  • see details about this motif
  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #3

    Motif appears at position -960 to -1 relative to the ATG AND
    motif appears at position -760 to -41 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    ACCCTTC|CCCACCC|AACACGA (BC4V2_0_01578) in nonsense dir., at pos. -904, p: 9.68e-08
    This motif matches the following known binding sites:
  • DROME$128_04, bound by: Deaf1
  • MOUSE$PAI1_01 - PAI-1 (plasminogen activator inhibitor type 1), bound by: P113
  • see details about this motif
    • Motif appears at these position(s): 
    AAAACCA|AAAAGGGGGG|GGGGAAA (BC4V2_0_01578) in sense dir., at pos. -68, p: 1.02e-08
    This motif matches the following known binding sites:
  • Y$FPS1_01 - FPS1 (glycerol channel protein), bound by: MIG1
  • MOUSE$IGKL_26 - Ig-kappa (immunoglobulin kappa light chain), bound by: POU2F1
  • see details about this motif
  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #4

    Motif appears at position -1000 to -361 relative to the ATG AND
    motif appears at position -880 to -561 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    ATTGGGA|AAAATTTGGAAAAAA|AAAGGTT (BC4V2_0_01578) in sense dir., at pos. -848, p: 4.8e-07

    This motif does not match any known binding sites.

  • Look at genes with similar expression patterns and regulatory domain structure.
    • Query for a group of genes. Learn about how the analysis was done.
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