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Structure of the abcH2 regulatory region

Listed are 2 possible structures of the regulatory region inferred using pufA- gene expression data.

Structure #1

Motif appears at position -1000 to -361 relative to the ATG AND
motif appears at position -880 to -561 relative to the ATG.

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
TTTCTGA|AAAATCTGTGGAAAA|AAGAAAG (abcH2) in sense dir., at pos. -772, p: 1.5e-07

This motif does not match any known binding sites.

  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #2

    Motif appears at position -960 to -561 relative to the ATG AND
    motif appears at position -960 to -721 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    GGTTATA|ACCAAAGTCTC|AAAAAAA (abcH2) in sense dir., at pos. -888, p: 7.49e-07
    This motif matches the following known binding sites:
  • MOUSE$CYR61_01 - cyr61, bound by: SRF
  • SOYBN$BCGA_03 - BCGA (beta-conglycinin alpha' subunit), bound by: SEF1
  • see details about this motif
  • Look at genes with similar expression patterns and regulatory domain structure.
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