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Structure of the JC3V2_0_01921 regulatory region

Listed are 4 possible structures of the regulatory region inferred using pufA- gene expression data.

Structure #1

Motif appears in nonsense direction at position -960 to -841 relative to the ATG.

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
ATTGAGG|CGCAGGGG|AGTGTAC (JC3V2_0_01921) in nonsense dir., at pos. -912, p: 3.45e-07
This motif matches the following known binding sites:
  • PV$CH5B_01 - CH5B (chitinase5B)
  • HS$MDR1_01 - MDR1 (multidrug resistance gene 1), bound by: Egr-1, Egr-2, Sp1
  • see details about this motif
  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #2

    Motif appears in nonsense direction at position -920 to -801 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    ATTGAGG|CGCAGGGG|AGTGTAC (JC3V2_0_01921) in nonsense dir., at pos. -912, p: 3.45e-07
    This motif matches the following known binding sites:
  • PV$CH5B_01 - CH5B (chitinase5B)
  • HS$MDR1_01 - MDR1 (multidrug resistance gene 1), bound by: Egr-1, Egr-2, Sp1
  • see details about this motif
  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #3

    Motif appears at position -1000 to -361 relative to the ATG AND
    motif appears at position -880 to -561 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    CAAAAAA|AAAATTTGGGAAAAA|AAAAAAA (JC3V2_0_01921) in nonsense dir., at pos. -778, p: 1.44e-07

    This motif does not match any known binding sites.

  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #4

    Motif appears at position -920 to -481 relative to the ATG AND
    motif appears at position -920 to -721 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    TTATTGA|GGCGCAGGGG|AGTGTAC (JC3V2_0_01921) in nonsense dir., at pos. -912, p: 5.61e-09
    This motif matches the following known binding sites:
  • Y$CAR1_02 - CAR1 (arginase), bound by: BUF
  • QUAIL$PAX6_09 - Pax-6/Pax-QNR (paired box gene 6), bound by: Pax-6 (Pax-QNR)
  • see details about this motif
  • Look at genes with similar expression patterns and regulatory domain structure.
    • Query for a group of genes. Learn about how the analysis was done.
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