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Listed are 3 possible structures of the regulatory region inferred using pufA- gene expression data.
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Motif  appears at position -1000 to -201 relative to the ATG AND
motif  appears at position -840 to -361 relative to the ATG.
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Motif appears at these position(s):
ATTAACC|CCCAACC|CATTAAA (geneDDB0233838) in nonsense dir., at pos. -364, p: 1.04e-06
This motif matches the following known binding sites:
CHICK$CYP2H1_02 - CYP2H1 (cytochrome P450 2H1)
PIG$UPA_07 - uPA (urokinase-type plasminogen activator)
see details about this motif
Motif appears at these position(s):
TATTTTA|ATGGGTTGG|GGGTTAA (geneDDB0233838) in sense dir., at pos. -367, p: 2.37e-07
This motif matches the following known binding sites:
DROME$H_63, bound by: Kr
HS$PES2_02 - PES2 (prostaglandin-endoperoxide synthase 2), bound by: C/EBPdelta
see details about this motif
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Look at genes with similar expression patterns and regulatory domain structure.
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Motif  appears at position -960 to -241 relative to the ATG AND
motif appears in sense direction at position -800 to -441 relative to the ATG.
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Motif appears at these position(s):
TTTTTTT|CCACTTGGATTATT|ATTCAAT (geneDDB0233838) in sense dir., at pos. -528, p: 1.44e-06
This motif does not match any known binding sites.
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Look at genes with similar expression patterns and regulatory domain structure.
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Motif  appears at position -1000 to -361 relative to the ATG AND
motif appears at position -880 to -561 relative to the ATG.
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Motif appears at these position(s):
AAAAAAT|AAAACTTTTGGAAAA|AAAAAAA (geneDDB0233838) in sense dir., at pos. -696, p: 3.99e-07
This motif does not match any known binding sites.
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Look at genes with similar expression patterns and regulatory domain structure.
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