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Structure of the dscE regulatory region

Listed are 2 possible structures of the regulatory region inferred using pufA- gene expression data.

Structure #1

Motif appears at position -920 to -1 relative to the ATG AND
motif appears at position -480 to -1 relative to the ATG AND
motif appears at position -360 to -41 relative to the ATG AND
motif appears at position -320 to -121 relative to the ATG.

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
AAATGAA|TTCACCCCATCAATC|AGTTAAA (dscE) in sense dir., at pos. -287, p: 2.66e-07
This motif matches the following known binding sites:
  • MOUSE$A11COL_05 - A1(1) COL (alpha1(I) collagen)
  • see details about this motif
  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #2

    Motif appears at position -1000 to -361 relative to the ATG AND
    motif appears at position -880 to -561 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    TTTGATT|AAAATCTGGAAAAAA|AAAAAAA (dscE) in nonsense dir., at pos. -692, p: 3.99e-07

    This motif does not match any known binding sites.

  • Look at genes with similar expression patterns and regulatory domain structure.
    • Query for a group of genes. Learn about how the analysis was done.
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