Structure of the vatM regulatory region
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Listed are 2 possible structures of the regulatory region inferred using pufA- gene expression data.
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Motif  appears at position -960 to -41 relative to the ATG AND
motif  appears at position -880 to -401 relative to the ATG AND
motif  appears at position 0 to 39 relative to .
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Motif appears at these position(s):
TTTGGCC|CACCCCC|GTTTTTT (vatM) in nonsense dir., at pos. -729, p: 1.94e-07
This motif matches the following known binding sites:
RAT$PEPCK_22 - PEPCK (phosphoenolpyruvate carboxykinase, cytosolic), bound by: COUP, RAR-alpha1
AT$SPA1_01 - SPA1 (phytochrome A supressor), bound by: PIF3
see details about this motif
Motif appears at these position(s):
AAAAAAC|GGGGGTGGGCC|AAAAAAA (vatM) in sense dir., at pos. -729, p: 2.6e-10
This motif matches the following known binding sites:
HS$EPOR_01 - EpoR (erythropoietin receptor), bound by: Sp1
AS$CACCC_01 - artificial sequence., bound by: CACCC-binding factor
see details about this motif
Motif appears at these position(s):
TTTGGCC|CACCCCC|GTTTTTT (vatM) in nonsense dir., at pos. -729, p: 9.68e-08
This motif matches the following known binding sites:
AS$PAX4_49 - artificial sequence., bound by: Pax-4a
HS$BG_14 - GLOB-B (beta-globin)
see details about this motif
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Look at genes with similar expression patterns and regulatory domain structure.
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Motif  appears at position -1000 to -361 relative to the ATG AND
motif appears at position -880 to -561 relative to the ATG.
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Motif appears at these position(s):
TTAATAA|AAAATTTGGAAAAAA|CGGGGGT (vatM) in sense dir., at pos. -745, p: 4.8e-07
This motif does not match any known binding sites.
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Look at genes with similar expression patterns and regulatory domain structure.
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