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Structure of the JC2V2_0_02050 regulatory region

Listed are 2 possible structures of the regulatory region inferred using pufA- gene expression data.

Structure #1

Motif appears at position -800 to -241 relative to the ATG AND
motif appears in nonsense direction at position -720 to -41 relative to the ATG.

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
TGTGTCA|GTGAAACAGAAG|GATGTGT (JC2V2_0_02050) in nonsense dir., at pos. -334, p: 1.98e-06

This motif does not match any known binding sites.

  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #2

    Motif appears at position -1000 to -361 relative to the ATG AND
    motif appears at position -880 to -561 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    TTTCAAA|AAAACTTTGAAAAAA|TTTCAAT (JC2V2_0_02050) in nonsense dir., at pos. -858, p: 1.02e-06

    This motif does not match any known binding sites.

  • Look at genes with similar expression patterns and regulatory domain structure.
    • Query for a group of genes. Learn about how the analysis was done.
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