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Structure of the BC5V2_0_00664 regulatory region

Listed are 2 possible structures of the regulatory region inferred using pufA- gene expression data.

Structure #1

Motif appears in nonsense direction at position -640 to -481 relative to the ATG.

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
AAGTGAT|GGTGGGAAAA|AAAAAAA (BC5V2_0_00664) in nonsense dir., at pos. -514, p: 7.81e-08
This motif matches the following known binding sites:
  • DROME$DDC_21, bound by: BR
  • MOUSE$AFEP_11 - AFP (alpha-fetoprotein), bound by: C/EBPalpha, NP-Va
  • see details about this motif
  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #2

    Motif appears at position -1000 to -361 relative to the ATG AND
    motif appears at position -880 to -561 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    AAAATAA|AAAATTTGGAAAAAA|TTTCTTT (BC5V2_0_00664) in nonsense dir., at pos. -573, p: 4.8e-07

    This motif does not match any known binding sites.

  • Look at genes with similar expression patterns and regulatory domain structure.
    • Query for a group of genes. Learn about how the analysis was done.
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