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Structure of the rps26 regulatory region

Listed are 7 possible structures of the regulatory region inferred using pufA- gene expression data.

Structure #1

Motif appears at position -760 to -41 relative to the ATG AND
motif appears at position -600 to -121 relative to the ATG.

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
ACAAAAA|AAAACAGCAG|TAATTTT (rps26) in sense dir., at pos. -77, p: 6e-07
This motif matches the following known binding sites:
  • DROME$UBX_51, bound by: Twi
  • BPV1$BPV1_20 - BPV-1 (bovine papilloma virus-1), bound by: E2
  • see details about this motif
    • Motif appears at these position(s): 
    CACCTTT|GCTGTTTTG|ATTCCTC (rps26) in nonsense dir., at pos. -268, p: 1.28e-06
    This motif matches the following known binding sites:
  • AS$MCARG_01 - artificial sequence., bound by: DEF:GLO:SQUA
  • AS$PAX4_10 - artificial sequence., bound by: Pax-4a
  • see details about this motif
  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #2

    Motif appears at position -760 to -41 relative to the ATG AND
    motif appears at position -640 to -121 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    ACAAAAA|AAAACAGCAG|TAATTTT (rps26) in sense dir., at pos. -77, p: 6e-07
    This motif matches the following known binding sites:
  • DROME$UBX_51, bound by: Twi
  • BPV1$BPV1_20 - BPV-1 (bovine papilloma virus-1), bound by: E2
  • see details about this motif
    • Motif appears at these position(s): 
    CACCTTT|GCTGTTTTG|ATTCCTC (rps26) in nonsense dir., at pos. -268, p: 1.28e-06
    This motif matches the following known binding sites:
  • AS$MCARG_01 - artificial sequence., bound by: DEF:GLO:SQUA
  • AS$PAX4_10 - artificial sequence., bound by: Pax-4a
  • see details about this motif
  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #3

    Motif appears at position -1000 to -121 relative to the ATG AND
    motif appears at position -760 to -361 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    AATCACC|ACCAACCAAAAAAAA|AAAAAAA (rps26) in sense dir., at pos. -388, p: 3.75e-07

    This motif does not match any known binding sites.

    Motif appears at these position(s): 
    AAATCAC|CACCAACCAAAAA|AAAAAAA (rps26) in sense dir., at pos. -389, p: 3.88e-08

    This motif does not match any known binding sites.

  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #4

    Motif appears in sense direction at position -240 to -121 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    TGGGTTG|GAAAAAAAAAACC|GAGTCAC (rps26) in sense dir., at pos. -217, p: 1.76e-06

    This motif does not match any known binding sites.

  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #5

    Motif appears at position -240 to -81 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    AAATTAC|TGCTGTTTTTTTTTG|TTGTAGT (rps26) in nonsense dir., at pos. -83, p: 1.52e-06

    This motif does not match any known binding sites.

  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #6

    Motif appears at position -960 to -41 relative to the ATG AND
    motif appears at position -960 to -361 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    AAATCAC|CACCAACCAAAAAA|AAAAAAA (rps26) in sense dir., at pos. -389, p: 2.48e-07

    This motif does not match any known binding sites.

    Motif appears at these position(s): 
    ATCACCA|CCAACCAAAA|AAAAAAA (rps26) in sense dir., at pos. -387, p: 2.11e-07

    This motif does not match any known binding sites.

  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #7

    Motif appears at position -1000 to -361 relative to the ATG AND
    motif appears at position -880 to -561 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    CAAAAAA|AAAATTTGGGAAAAA|AAAAAAA (rps26) in sense dir., at pos. -820, p: 1.44e-07

    This motif does not match any known binding sites.

  • Look at genes with similar expression patterns and regulatory domain structure.
    • Query for a group of genes. Learn about how the analysis was done.
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