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Genes with similar expression patterns and regulatory domain structures

Description of the computationally inferred structure of gene regulatory sequence elements
There are 6 genes that match this regulatory region structure and are co-regulated in the pufA- gene expression data:

Motif appears at position -960 to -41 relative to the ATG AND
motif appears at position -880 to -401 relative to the ATG AND
motif appears at position 0 to 39 relative to .

Regulatory region snapshot
ecmD ( dictyBase Home >> Chromosome 4:4787417..4788497 >> Gene: ecmD >> Regulatory Region )
geneDDB0231588 ( dictyBase Home >> Chromosome 4:4787417..4788497 >> Gene: ecmD >> Regulatory Region )
orfR1062 ( dictyBase Home >> Chromosome 4:4787417..4788497 >> Gene: ecmD >> Regulatory Region )
psmD2 ( dictyBase Home >> Chromosome 4:4787417..4788497 >> Gene: ecmD >> Regulatory Region )
rsmJ ( dictyBase Home >> Chromosome 4:4787417..4788497 >> Gene: ecmD >> Regulatory Region )
vatM ( dictyBase Home >> Chromosome 4:4787417..4788497 >> Gene: ecmD >> Regulatory Region )

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
AAAGCAC|CACCCCC|GATCTCA (psmD2) in sense dir., at pos. -807, p: 1.94e-07
TTTGGCC|CACCCCC|GTTTTTT (vatM) in nonsense dir., at pos. -729, p: 1.94e-07
ACCTACC|CACCCCC|CCAATAC (ecmD) in sense dir., at pos. -542, p: 1.94e-07
ACCCACC|CACCCCC|ATTTTCA (orfR1062) in sense dir., at pos. -476, p: 1.94e-07
ACACCCA|CACCCCC|CATAGTG (geneDDB0231588) in nonsense dir., at pos. -425, p: 1.94e-07
CTTACCC|CACCCCC|ACCCCCT (rsmJ) in nonsense dir., at pos. -400, p: 1.94e-07
This motif matches the following known binding sites:
  • RAT$PEPCK_22 - PEPCK (phosphoenolpyruvate carboxykinase, cytosolic), bound by: COUP, RAR-alpha1
  • AT$SPA1_01 - SPA1 (phytochrome A supressor), bound by: PIF3
  • see details about this motif
    • Motif appears at these position(s): 
    TGAGATC|GGGGGTGGTGC|TTTTTTT (psmD2) in nonsense dir., at pos. -811, p: 1.76e-09
AAAAAAC|GGGGGTGGGCC|AAAAAAA (vatM) in sense dir., at pos. -729, p: 2.6e-10
ATGTATT|GGGGGGGTGGG|TAGGTAG (ecmD) in nonsense dir., at pos. -544, p: 5.99e-11
TGAAAAT|GGGGGTGGGTG|GGTGGAT (orfR1062) in nonsense dir., at pos. -480, p: 6.86e-10
CACTATG|GGGGGTGTGGG|TGTGTGT (geneDDB0231588) in sense dir., at pos. -425, p: 9.46e-11
TGGATAA|GGGGGTGGGGG|TGGGGTA (rsmJ) in sense dir., at pos. -406, p: 5.65e-12
    This motif matches the following known binding sites:
  • HS$EPOR_01 - EpoR (erythropoietin receptor), bound by: Sp1
  • AS$CACCC_01 - artificial sequence., bound by: CACCC-binding factor
  • see details about this motif
    • Motif appears at these position(s): 
    AAAGCAC|CACCCCC|GATCTCA (psmD2) in sense dir., at pos. -807, p: 9.68e-08
TTTGGCC|CACCCCC|GTTTTTT (vatM) in nonsense dir., at pos. -729, p: 9.68e-08
ACCTACC|CACCCCC|CCAATAC (ecmD) in sense dir., at pos. -542, p: 9.68e-08
ACCCACC|CACCCCC|ATTTTCA (orfR1062) in sense dir., at pos. -476, p: 9.68e-08
ACACCCA|CACCCCC|CATAGTG (geneDDB0231588) in nonsense dir., at pos. -425, p: 9.68e-08
CTTACCC|CACCCCC|ACCCCCT (rsmJ) in nonsense dir., at pos. -400, p: 9.68e-08
    This motif matches the following known binding sites:
  • AS$PAX4_49 - artificial sequence., bound by: Pax-4a
  • HS$BG_14 - GLOB-B (beta-globin)
  • see details about this motif
    • Group gene expression

    Here you can see all gene expression profiles data for all genes in this group.


    Query for a group of genes. Learn about how the analysis was done.
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