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Genes with similar expression patterns and regulatory domain structures

Description of the computationally inferred structure of gene regulatory sequence elements
There are 6 genes that match this regulatory region structure and are co-regulated in the pufA- gene expression data:

Motif appears at position -1000 to -281 relative to the ATG AND
motif appears in sense direction at position -920 to -401 relative to the ATG.

Regulatory region snapshot
BC4V2_0_01578 ( dictyBase Home >> Chromosome 4:4014211..4015548 >> Gene: DDB_G0286063 >> Regulatory Region )
abnB ( dictyBase Home >> Chromosome 4:4014211..4015548 >> Gene: DDB_G0286063 >> Regulatory Region )
eIF3s5 ( dictyBase Home >> Chromosome 4:4014211..4015548 >> Gene: DDB_G0286063 >> Regulatory Region )
geneDDB0231194 ( dictyBase Home >> Chromosome 4:4014211..4015548 >> Gene: DDB_G0286063 >> Regulatory Region )
geneDDB0238046 ( dictyBase Home >> Chromosome 4:4014211..4015548 >> Gene: DDB_G0286063 >> Regulatory Region )
syn8B ( dictyBase Home >> Chromosome 4:4014211..4015548 >> Gene: DDB_G0286063 >> Regulatory Region )

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
AAGGAAC|CCTTCCCCACC|CAACACG (BC4V2_0_01578) in nonsense dir., at pos. -903, p: 1.94e-08
ATATATT|CCACCCTCTCC|CCCCCCC (abnB) in nonsense dir., at pos. -803, p: 1.07e-09
CATAACC|CCTCCCCCACC|TCAAAAA (syn8B) in nonsense dir., at pos. -773, p: 5.62e-10
ACCACCA|CCACCACCTCC|ACCAGGT (eIF3s5) in nonsense dir., at pos. -740, p: 4.82e-09
TTCACCC|CCTCCCACACC|TAAACTA (geneDDB0231194) in nonsense dir., at pos. -637, p: 1.65e-09
ACTACCA|CCACCACCTCC|AATTTCA (geneDDB0238046) in nonsense dir., at pos. -415, p: 4.82e-09
This motif matches the following known binding sites:
  • MOUSE$GLUT2_03 - GLUT2 (glucose transporter 2)
  • HS$CD11B_02 - CD11b (leukocyte (myeloid) integrin CD11b), bound by: PU.1, PU.1
  • see details about this motif
    • Motif appears at these position(s): 
    TCGTGTT|GGGTGGGGAAGGGTT|CCTTTAA (BC4V2_0_01578) in sense dir., at pos. -904, p: 2.58e-11
TTTGTGT|GGGTGGGGGGGGGGG|AGAGGGT (abnB) in sense dir., at pos. -816, p: 7.85e-11
TTTTTGA|GGTGGGGGAGGGGTT|ATGAAAG (syn8B) in sense dir., at pos. -773, p: 1.69e-10
ACCTGGT|GGAGGTGGTGGTGGT|GGTGGTT (eIF3s5) in sense dir., at pos. -740, p: 1.29e-09
TGTGGGA|GGGGGTGAAGGGGGT|GGGTAAT (geneDDB0231194) in sense dir., at pos. -628, p: 4.3e-10
TGAAATT|GGAGGTGGTGGTGGT|AGTGGTG (geneDDB0238046) in sense dir., at pos. -415, p: 1.29e-09

    This motif does not match any known binding sites.

    Group gene expression

    Here you can see all gene expression profiles data for all genes in this group.


    Query for a group of genes. Learn about how the analysis was done.
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