An Online Informatics Resource for Dictyostelium
  Search dictyBase:
use * as a wildcard character
Genome Browser BLAST dictyMart Stock Center Research Tools Help Links Contact Us

Genes with similar expression patterns and regulatory domain structures

Description of the computationally inferred structure of gene regulatory sequence elements
There are 6 genes that match this regulatory region structure and are co-regulated in the pufA- gene expression data:

Motif appears in nonsense direction at position -640 to -481 relative to the ATG.

Regulatory region snapshot
BC4V2_0_00562 ( dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region )
BC5V2_0_00664 ( dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region )
JC1V2_0_01440 ( dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region )
lap ( dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region )
racC ( dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region )
rapC ( dictyBase Home >> Chromosome 4:1471820..1473767 >> Gene: DDB_G0284051 >> Regulatory Region )

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
TAATTTA|GGTGGCCAAA|TGATTGA (JC1V2_0_01440) in nonsense dir., at pos. -615, p: 1.72e-08
TCCCCCT|GGTGGGAAAA|TTTTGAT (BC4V2_0_00562) in nonsense dir., at pos. -611, p: 7.81e-08
TTTATTG|GGTGGGAAAA|AAGTTTT (rapC) in nonsense dir., at pos. -524, p: 7.81e-08
AAGTGAT|GGTGGGAAAA|AAAAAAA (BC5V2_0_00664) in nonsense dir., at pos. -514, p: 7.81e-08
AATGTTA|GGGGGGAAAA|AAATTTG (racC) in nonsense dir., at pos. -511, p: 2.45e-08
ACAATTG|GGTGGGAAAA|AAAAATA (lap) in nonsense dir., at pos. -493, p: 7.81e-08
This motif matches the following known binding sites:
  • DROME$DDC_21, bound by: BR
  • MOUSE$AFEP_11 - AFP (alpha-fetoprotein), bound by: C/EBPalpha, NP-Va
  • see details about this motif
    • Group gene expression

    Here you can see all gene expression profiles data for all genes in this group.


    Query for a group of genes. Learn about how the analysis was done.
    Return to Home Supported by NIH (NIGMS and NHGRI) Send a Message to the dictyBase Curators