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Genes with similar expression patterns and regulatory domain structures

Description of the computationally inferred structure of gene regulatory sequence elements
There are 22 genes that match this regulatory region structure and are co-regulated in the pufA- gene expression data:

Motif appears at position -1000 to -361 relative to the ATG AND
motif appears at position -880 to -561 relative to the ATG.

Regulatory region snapshot
BC4V2_0_01578 ( dictyBase Home >> Chromosome 4:4014099..4015660 >> Gene: DDB_G0286063 >> Regulatory Region )
BC5V2_0_00023 ( dictyBase Home >> Chromosome 4:4014099..4015660 >> Gene: DDB_G0286063 >> Regulatory Region )
BC5V2_0_00664 ( dictyBase Home >> Chromosome 4:4014099..4015660 >> Gene: DDB_G0286063 >> Regulatory Region )
BEC6V2_0_00202 ( dictyBase Home >> Chromosome 4:4014099..4015660 >> Gene: DDB_G0286063 >> Regulatory Region )
JC1V2_0_00529 ( dictyBase Home >> Chromosome 4:4014099..4015660 >> Gene: DDB_G0286063 >> Regulatory Region )
JC2V2_0_02050 ( dictyBase Home >> Chromosome 4:4014099..4015660 >> Gene: DDB_G0286063 >> Regulatory Region )
JC2V2_0_02449 ( dictyBase Home >> Chromosome 4:4014099..4015660 >> Gene: DDB_G0286063 >> Regulatory Region )
JC3V2_0_01921 ( dictyBase Home >> Chromosome 4:4014099..4015660 >> Gene: DDB_G0286063 >> Regulatory Region )
JC3V2_0_02235 ( dictyBase Home >> Chromosome 4:4014099..4015660 >> Gene: DDB_G0286063 >> Regulatory Region )
abcH2 ( dictyBase Home >> Chromosome 4:4014099..4015660 >> Gene: DDB_G0286063 >> Regulatory Region )
abpE ( dictyBase Home >> Chromosome 4:4014099..4015660 >> Gene: DDB_G0286063 >> Regulatory Region )
cplA ( dictyBase Home >> Chromosome 4:4014099..4015660 >> Gene: DDB_G0286063 >> Regulatory Region )
dscE ( dictyBase Home >> Chromosome 4:4014099..4015660 >> Gene: DDB_G0286063 >> Regulatory Region )
geneDDB0233646 ( dictyBase Home >> Chromosome 4:4014099..4015660 >> Gene: DDB_G0286063 >> Regulatory Region )
geneDDB0233767 ( dictyBase Home >> Chromosome 4:4014099..4015660 >> Gene: DDB_G0286063 >> Regulatory Region )
geneDDB0233838 ( dictyBase Home >> Chromosome 4:4014099..4015660 >> Gene: DDB_G0286063 >> Regulatory Region )
geneDDB0237682 ( dictyBase Home >> Chromosome 4:4014099..4015660 >> Gene: DDB_G0286063 >> Regulatory Region )
ino1 ( dictyBase Home >> Chromosome 4:4014099..4015660 >> Gene: DDB_G0286063 >> Regulatory Region )
phr2AB ( dictyBase Home >> Chromosome 4:4014099..4015660 >> Gene: DDB_G0286063 >> Regulatory Region )
rpl34 ( dictyBase Home >> Chromosome 4:4014099..4015660 >> Gene: DDB_G0286063 >> Regulatory Region )
rps26 ( dictyBase Home >> Chromosome 4:4014099..4015660 >> Gene: DDB_G0286063 >> Regulatory Region )
vatM ( dictyBase Home >> Chromosome 4:4014099..4015660 >> Gene: DDB_G0286063 >> Regulatory Region )

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
GAAAAAC|AAAATTTGGAAAAAA|ATTTGAA (geneDDB0237682) in sense dir., at pos. -866, p: 4.8e-07
TAAAAAA|AAAATTTGGGGAAAA|AAAAAAA (phr2AB) in sense dir., at pos. -861, p: 2.19e-08
TTTCAAA|AAAACTTTGAAAAAA|TTTCAAT (JC2V2_0_02050) in nonsense dir., at pos. -858, p: 1.02e-06
ATTGGGA|AAAATTTGGAAAAAA|AAAGGTT (BC4V2_0_01578) in sense dir., at pos. -848, p: 4.8e-07
AAAAAAA|AAAATTTGGAAAAAA|AAAAAAA (JC2V2_0_02449) in nonsense dir., at pos. -837, p: 4.8e-07
CAAAAAA|AAAATTTGGGAAAAA|AAAAAAA (rps26) in sense dir., at pos. -820, p: 1.44e-07
TTATAAT|AAAATCTGTGAAAAA|TAATAAA (BC5V2_0_00023) in sense dir., at pos. -820, p: 5.48e-07
TTGGAAA|AAAATTTGGAAAAAA|AAAAAAA (geneDDB0233767) in sense dir., at pos. -806, p: 4.8e-07
AAAAAAA|AAAATTTGGAAAAAA|AAAAAGA (abpE) in nonsense dir., at pos. -801, p: 4.8e-07
ATAAAAT|AAAATTTTCGGAAAA|AAAAAAA (BEC6V2_0_00202) in sense dir., at pos. -788, p: 1.25e-06
ATTTTCT|AAAATCTGGAAAAAA|AATTAAT (rpl34) in sense dir., at pos. -779, p: 3.99e-07
ATCAAAA|AAAATTTGGAAAAAA|AAAAAAA (cplA) in sense dir., at pos. -779, p: 4.8e-07
CAAAAAA|AAAATTTGGGAAAAA|AAAAAAA (JC3V2_0_01921) in nonsense dir., at pos. -778, p: 1.44e-07
TTTCTGA|AAAATCTGTGGAAAA|AAGAAAG (abcH2) in sense dir., at pos. -772, p: 1.5e-07
TTAATAA|AAAATTTGGAAAAAA|CGGGGGT (vatM) in sense dir., at pos. -745, p: 4.8e-07
AAAAAAA|AAAATTTGGAAAAAA|AAAAAAA (ino1) in sense dir., at pos. -709, p: 4.8e-07
AAAAAAA|AAAACCAGGGGAAAA|TATCCAA (geneDDB0233646) in sense dir., at pos. -704, p: 1.13e-08
AAAAAAT|AAAACTTTTGGAAAA|AAAAAAA (geneDDB0233838) in sense dir., at pos. -696, p: 3.99e-07
TTTGATT|AAAATCTGGAAAAAA|AAAAAAA (dscE) in nonsense dir., at pos. -692, p: 3.99e-07
GCTATCT|AAAATCTGCAAAAAA|TTAAATT (JC3V2_0_02235) in nonsense dir., at pos. -657, p: 8.55e-07
AATTTGA|AAAATTTGGAAAAAA|AAAAAAA (geneDDB0233767) in nonsense dir., at pos. -642, p: 4.8e-07
AACAGGA|AAAATCTGCGAAAAA|AAAAAAA (JC1V2_0_00529) in sense dir., at pos. -574, p: 2.87e-07
AAAATAA|AAAATTTGGAAAAAA|TTTCTTT (BC5V2_0_00664) in nonsense dir., at pos. -573, p: 4.8e-07
AAATTTA|AAAATTTGGAAAAAA|AAAAAAA (phr2AB) in nonsense dir., at pos. -527, p: 4.8e-07

This motif does not match any known binding sites.

Group gene expression

Here you can see all gene expression profiles data for all genes in this group.


Query for a group of genes. Learn about how the analysis was done.
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