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Genes with similar expression patterns and regulatory domain structures

Description of the computationally inferred structure of gene regulatory sequence elements
There are 6 genes that match this regulatory region structure and are co-regulated in the pufA- gene expression data:

Motif appears at position -760 to -41 relative to the ATG AND
motif appears at position -600 to -121 relative to the ATG.

Regulatory region snapshot
JC3V2_0_00629 ( dictyBase Home >> Chromosome 3:1579326..1582929 >> Gene: pan3 >> Regulatory Region )

apnA ( dictyBase Home >> Chromosome 3:1579326..1582929 >> Gene: pan3 >> Regulatory Region )

pufA ( dictyBase Home >> Chromosome 3:1579326..1582929 >> Gene: pan3 >> Regulatory Region )

rab7A ( dictyBase Home >> Chromosome 3:1579326..1582929 >> Gene: pan3 >> Regulatory Region )

rps17 ( dictyBase Home >> Chromosome 3:1579326..1582929 >> Gene: pan3 >> Regulatory Region )

rps26 ( dictyBase Home >> Chromosome 3:1579326..1582929 >> Gene: pan3 >> Regulatory Region )

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s):
AATTACA|ACAACAGCAG|CTATTAC (JC3V2_0_00629) in sense dir., at pos. -550, p: 1.71e-07
TACAACA|ACAACAGCAG|CAAGCAT (JC3V2_0_00629) in sense dir., at pos. -529, p: 1.71e-07
CAAAAAC|AAAACAGCCT|GAAAAAT (rps17) in sense dir., at pos. -507, p: 6e-07
TTTTTAC|AAAACAGCAG|GTAAAAC (apnA) in nonsense dir., at pos. -192, p: 6e-07
TACCACC|ACAACAGCAG|CAACAAC (pufA) in sense dir., at pos. -172, p: 1.71e-07
AAGTTTT|ACAACAGCCG|TTTATAT (rab7A) in sense dir., at pos. -123, p: 7.26e-09
ACAAAAA|AAAACAGCAG|TAATTTT (rps26) in sense dir., at pos. -77, p: 6e-07
This motif matches the following known binding sites:
  • DROME$UBX_51, bound by: Twi
  • BPV1$BPV1_20 - BPV-1 (bovine papilloma virus-1), bound by: E2
  • see details about this motif

  • Motif appears at these position(s):
    TGTAATT|GCTGTTTTG|GTATATA (JC3V2_0_00629) in nonsense dir., at pos. -575, p: 1.28e-06
    TTTTCAG|GCTGTTTTG|TTTTTGT (rps17) in nonsense dir., at pos. -508, p: 1.28e-06
    CACCTTT|GCTGTTTTG|ATTCCTC (rps26) in nonsense dir., at pos. -268, p: 1.28e-06
    TTTACCT|GCTGTTTTG|TAAAAAT (apnA) in sense dir., at pos. -190, p: 1.28e-06
    TGTTGCT|GCTGTTGTG|GTGGTAA (pufA) in nonsense dir., at pos. -173, p: 9.28e-08
    ATAAACG|GCTGTTGTA|AAACTTA (rab7A) in nonsense dir., at pos. -124, p: 1.28e-06
    
    This motif matches the following known binding sites:
  • AS$MCARG_01 - artificial sequence., bound by: DEF:GLO:SQUA
  • AS$PAX4_10 - artificial sequence., bound by: Pax-4a
  • see details about this motif
  • Group gene expression

    Here you can see all gene expression profiles data for all genes in this group.


    Query for a group of genes. Learn about how the analysis was done.