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Genes with similar expression patterns and regulatory domain structures

Description of the computationally inferred structure of gene regulatory sequence elements
There are 9 genes that match this regulatory region structure and are co-regulated in the pufA- gene expression data:

Motif appears at position -920 to -1 relative to the ATG AND
motif appears at position -480 to -1 relative to the ATG AND
motif appears at position -360 to -41 relative to the ATG AND
motif appears at position -320 to -121 relative to the ATG.

Regulatory region snapshot
BC4V2_0_00784 ( dictyBase Home >> Chromosome 4:2034666..2036028 >> Gene: DDB_G0284485 >> Regulatory Region )
BEC6V2_0_00647 ( dictyBase Home >> Chromosome 4:2034666..2036028 >> Gene: DDB_G0284485 >> Regulatory Region )
JC3V2_0_01586 ( dictyBase Home >> Chromosome 4:2034666..2036028 >> Gene: DDB_G0284485 >> Regulatory Region )
dscE ( dictyBase Home >> Chromosome 4:2034666..2036028 >> Gene: DDB_G0284485 >> Regulatory Region )
gacS ( dictyBase Home >> Chromosome 4:2034666..2036028 >> Gene: DDB_G0284485 >> Regulatory Region )
gpaI ( dictyBase Home >> Chromosome 4:2034666..2036028 >> Gene: DDB_G0284485 >> Regulatory Region )
patB ( dictyBase Home >> Chromosome 4:2034666..2036028 >> Gene: DDB_G0284485 >> Regulatory Region )
racH ( dictyBase Home >> Chromosome 4:2034666..2036028 >> Gene: DDB_G0284485 >> Regulatory Region )
rpl14 ( dictyBase Home >> Chromosome 4:2034666..2036028 >> Gene: DDB_G0284485 >> Regulatory Region )

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
ATTTTTT|TTTTCCCATTCCATT|ATTTTAT (patB) in sense dir., at pos. -302, p: 7.13e-07
AAATGAA|TTCACCCCATCAATC|AGTTAAA (dscE) in sense dir., at pos. -287, p: 2.66e-07
TATTTTA|TTTTCCCAGTCCCTC|TTTGTTT (gpaI) in sense dir., at pos. -244, p: 3.27e-07
TCGCTAT|GTCACTCTCTCAATC|AATTTCT (rpl14) in sense dir., at pos. -242, p: 1.13e-06
TAATATA|GTCACTCACTCACTC|TCACTCA (racH) in sense dir., at pos. -237, p: 8.75e-07
TAATACT|TTTTCCCAATCCTTT|GATTGTG (BEC6V2_0_00647) in nonsense dir., at pos. -216, p: 7.13e-07
CAACAAT|TTCACACAAACCATC|ATAAAAA (BC4V2_0_00784) in nonsense dir., at pos. -216, p: 8.75e-07
GAATTTA|GTTACTCTATTCATC|ATTATTA (JC3V2_0_01586) in sense dir., at pos. -214, p: 4.89e-07
TTTTTTT|TTTTCTCAATTATTC|TATTTTT (gacS) in sense dir., at pos. -133, p: 1.41e-06
This motif matches the following known binding sites:
  • MOUSE$A11COL_05 - A1(1) COL (alpha1(I) collagen)
  • see details about this motif
    • Group gene expression

    Here you can see all gene expression profiles data for all genes in this group.


    Query for a group of genes. Learn about how the analysis was done.
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