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The regulatory region of tmem56C

dictyBase Home >> Chromosome 1:4822077..4823294 >> Gene: tmem56C >> Regulatory Region
Regulatory region snapshot
Description of the computationally inferred structure of gene regulatory sequence elements

Motif appears at position -880 to -401 relative to the ATG AND
motif appears at position -840 to -401 relative to the ATG.

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
ATAACAC|GTCAACCCA|AAAATGA (JC1V2_0_01923) in nonsense dir., at pos. -405, p: 9.28e-08
This motif matches the following known binding sites:
  • RAT$EAI_03 - ELA1 (elastase I)
  • DROME$FTZ_39, bound by: Slp1
  • see details about this motif
    • Motif appears at these position(s): 
    ATAACAC|GTCAACCC|AAAAATG (JC1V2_0_01923) in nonsense dir., at pos. -404, p: 3.98e-07
    This motif matches the following known binding sites:
  • AS$RAR_21 - artificial sequence., bound by: RAR-alpha1, RXR-alpha
  • HS$TSHB_03 - TSHB (thyrotropin beta subunit), bound by: c-Jun, c-Jun, T3R-alpha, T3R-alpha2, T3R-alpha2, T3R-beta, T3R-beta1, T3R-beta1, T3R-beta1, T3R-beta2, T3R-beta2
  • see details about this motif
    • Explore this gene further
  • List all inferred regulatory region structures that include this gene using yakA- pufA- data.
  • Look at genes with similar expression patterns and regulatory domain structure.
  • This regulatory region structure was inferred using yakA- pufA- gene expression data. Look at structures inferred using other data (click on the panel with the gene expression of interest below).


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