Clusters of genes with similar expression patterns and regulatory domain structures using data on yakA-

Rule Graph

Nodes are rules (i.e. descriptions of inferred structure), named in the following form: "cluster #, structure #". This naming follows the same order as which is used in the table below. Two rules are connected if they share at least five genes. Only rules connected with at least one other rule are shown. You can click on nodes.

Gene Graph

Nodes are genes. Two genes are connected if they are described by same rule. Shown are only genes described by at least three rules appearing in the Rule Graph. You can click on nodes.

Motif Graph

Nodes are motifs. Two motifs are connected if they appear in same description of structure. You can click on nodes.

Detailed list of discovered clusters using data on yakA-

cluster # link(s) to details on inferred structures that describe the cluster genes 1 structure 1 6 genes: BEC6V2_0_01328, JC2V2_0_00939, JC2V2_0_01630, JC3V2_0_00591, JC3V2_0_02019, geneDDB0237745 2 structure 1 7 genes: BC4V2_0_00625, BC5V2_0_00822, JC2V2_0_00390, JC2V2_0_00939, JC2V2_0_03281, canA, colC 3 structure 1 6 genes: BC4V2_0_01781, BC5V2_0_00822, BEC6V2_0_00817, JC2V2_0_00461, eIF3s12, pkgB 4 structure 1 6 genes: BEC6V2_0_01251, BEC6V2_0_01328, JC2V2_0_00939, JC3V2_0_00591, JC3V2_0_02019, mkpA 5 structure 1 6 genes: BC4V2_0_00222, BC4V2_0_00625, BC4V2_0_01781, BC5V2_0_00822, JC3V2_0_01545, pkgB 6 structure 1 6 genes: BC5V2_0_00822, BEC6V2_0_01251, JC1V2_0_00636, JC2V2_0_00939, bzpP, geneDDB0231729 7 structure 1 6 genes: BC4V2_0_01583, BC5V2_0_00420, BC5V2_0_01370, JC2V2_0_00939, JC3V2_0_00591, JC3V2_0_02019 8 structure 1 6 genes: BC4V2_0_00222, BC4V2_0_01781, BC5V2_0_00057, BC5V2_0_00822, BEC6V2_0_00817, bzpP 9 structure 1 6 genes: BEC6V2_0_01251, JC3V2_0_00591, JC3V2_0_02019, mkpA, pats1, rabG2 10 structure 1 6 genes: BEC6V2_0_01251, BEC6V2_0_01328, JC2V2_0_01630, JC3V2_0_02019, dhkD, pats1 11 structure 1 6 genes: BC5V2_0_00651, BC5V2_0_00822, JC2V2_0_00939, JC3V2_0_00092, geneDDB0231729, tnpo 12 structure 1 6 genes: BC4V2_0_00625, BC5V2_0_00758, BC5V2_0_00822, JC2V2_0_00461, carB, pkgB 13 structure 1 6 genes: BC4V2_0_00222, BC5V2_0_00822, JC2V2_0_01259, bzpP, geneDDB0237763, rcdK 14 structure 1 6 genes: BC4V2_0_01781, BC5V2_0_00822, BEC6V2_0_00817, BEC6V2_0_01386, mppB, rabG2 15 structure 1 6 genes: BC4V2_0_00222, BC4V2_0_01583, BC5V2_0_00822, BEC6V2_0_01386, CYP519D1, sgmB 16 structure 1 9 genes: BEC6V2_0_01251, JC2V2_0_01630, JC3V2_0_00591, JC3V2_0_02019, dhkD, kxcB, mkpA, pats1, rabG2 17 structure 1 6 genes: BC4V2_0_01781, BC5V2_0_00499, BC5V2_0_00822, BEC6V2_0_00168, JC2V2_0_00390, geneDDB0233688 18 structure 1 7 genes: BEC6V2_0_01244, JC2V2_0_00390, JC2V2_0_00939, JC2V2_0_03281, JC3V2_0_01851, canA, colC 19 structure 1 6 genes: BC4V2_0_00222, JC2V2_0_00390, JC3V2_0_01851, JC3V2_0_01907, cigA, colC 20 structure 1 6 genes: BC4V2_0_02099, BC5V2_0_00057, BEC6V2_0_00817, JC1V2_0_00636, dstC, stlB 21 structure 1 6 genes: BC4V2_0_00222, BC4V2_0_01781, BC5V2_0_00323, BC5V2_0_01190, BEC6V2_0_00817, JC3V2_0_01172 22 structure 1 6 genes: BC4V2_0_00222, BC5V2_0_00758, Unc104, gefK, mppB, phr2AB 23 structure 1 6 genes: BC5V2_0_00057, JC2V2_0_00939, JC2V2_0_03281, JC3V2_0_01665, fscD, geneDDB0231729 24 structure 1 6 genes: BC5V2_0_01062, BC5V2_0_01177, JC3V2_0_02019, bzpP, geneDDB0230038, geneDDB0231729 25 structure 1 6 genes: CRTF, JC1V2_0_01542, JC2V2_0_01559, cnrM, geneDDB0231578, geneDDB0234118 26 structure 1 7 genes: BC5V2_0_00822, JC1V2_0_00372, JC3V2_0_00455, geneDDB0231389, geneDDB0233688, geneDDB0234118, ints6 27 structure 1 6 genes: 5NT, BC5V2_0_00057, JC2V2_0_03281, JC3V2_0_01665, fscD, geneDDB0231729 28 structure 1 7 genes: BC4V2_0_01781, BEC6V2_0_01244, JC2V2_0_00390, JC3V2_0_01851, canA, colC, sf3a1 29 structure 1 6 genes: DYNC1LI1, JC2V2_0_02670, geneDDB0233691, geneDDB0237680, hgsA, hspK 30 structure 1 6 genes: BC4V2_0_00386, BC5V2_0_01370, JC2V2_0_00939, JC2V2_0_02585, geneDDB0230001, geneDDB0233904 31 structure 1, structure 2 7 genes: BC4V2_0_00568, BC4V2_0_00680, BC4V2_0_01385, BC5V2_0_01370, BEC6V2_0_01324, CRTF, abcA5 32 structure 1 6 genes: BC4V2_0_00255, BC5V2_0_00323, JC1V2_0_00636, JC3V2_0_01170, JC3V2_0_01921, rps26 33 structure 1 7 genes: JC2V2_0_00387, JC2V2_0_00939, JC3V2_0_01851, bzpP, dstC, gdt9, geneDDB0219997 34 structure 1 7 genes: BC5V2_0_00499, JC2V2_0_00939, JC3V2_0_00455, JC3V2_0_01665, geneDDB0233688, ints6, vatP 35 structure 1 6 genes: BEC6V2_0_01324, JC1V2_0_00656, JC3V2_0_02341, JC3V2_0_02433, abcA5, pdeE 36 structure 1 6 genes: JC1V2_0_00495, JC2V2_0_03018, geneDDB0231513, geneDDB0237746, gxcBB, lipA 37 structure 1, structure 2, structure 3 6 genes: BC4V2_0_00924, BC5V2_0_00323, BEC6V2_0_01386, JC2V2_0_01259, fadA, gefC 38 structure 1 6 genes: BC4V2_0_00222, BC5V2_0_00356, JC3V2_0_00571, geneDDB0216329, geneDDB0237628, rpl26 39 structure 1 6 genes: BC5V2_0_01735, BEC6V2_0_01386, bzpH, ctxA, gefC, srfC 40 structure 1 9 genes: BC4V2_0_02099, BC5V2_0_00057, BEC6V2_0_00817, JC1V2_0_00636, JC2V2_0_00387, JC2V2_0_02398, geneDDB0232156, mppB, stlB 41 structure 1 6 genes: BC5V2_0_00057, JC3V2_0_01665, geneDDB0231588, geneDDB0233869, ino80, stlB 42 structure 1 6 genes: BC5V2_0_01445, BEC6V2_0_00279, JC2V2_0_01652, JC3V2_0_02458, geneDDB0220498, rcnA 43 structure 1, structure 2, structure 3 6 genes: JC2V2_0_02912, JC3V2_0_00917, cprB, dcsA, eIF3s5, geneDDB0233920 44 structure 1 6 genes: BC4V2_0_01069, JC2V2_0_00939, JC2V2_0_01317, JC3V2_0_01526, geneDDB0219997, rps26 45 structure 1 6 genes: JC1V2_0_00381, coq2, geneDDB0231495, glkA, tnpo, ubqC 46 structure 1 7 genes: BC4V2_0_00222, BC5V2_0_00758, JC2V2_0_00211, ctxA, gefK, mppB, phr2AB 47 structure 1 8 genes: BC4V2_0_01781, BC5V2_0_00822, JC1V2_0_00314, cap, fcpA, gefQ, geneDDB0234013, mppB 48 structure 1 6 genes: BC4V2_0_00222, JC3V2_0_01170, ctxA, dynD, geneDDB0234070, phr2AB 49 structure 1 6 genes: BC4V2_0_01781, JC2V2_0_02699, geneDDB0232156, geneDDB0233869, mppB, phr2AB 50 structure 1 6 genes: BC5V2_0_00323, BEC6V2_0_00168, BEC6V2_0_00279, alfA, geneDDB0233396, geneDDB0233455 51 structure 1 6 genes: BC4V2_0_00568, BEC6V2_0_00188, BEC6V2_0_01324, JC2V2_0_00345, abcA5, exo70 52 structure 1 9 genes: CAX1, JC2V2_0_01229, JC2V2_0_01630, JC2V2_0_03281, NGAP, fcpA, geneDDB0231107, geneDDB0233339, mybO 53 structure 1 6 genes: BC4V2_0_01272, DidioMp36, JC3V2_0_01840, geneDDB0232212, grp94, hemG 54 structure 1, structure 2 6 genes: JC1V2_0_01056, geneDDB0220482, geneDDB0231559, masA, mecr, uap56 55 structure 1 6 genes: BC4V2_0_01597, BEC6V2_0_00309, BEC6V2_0_00992, BEC6V2_0_01324, abcA5, geneDDB0234232 56 structure 1, structure 2 6 genes: BC4V2_0_02099, BC5V2_0_01938, JC1V2_0_00314, eIF6, geneDDB0231722, geneDDB0237865 57 structure 1 8 genes: BC4V2_0_00736, BC4V2_0_01091, BC5V2_0_00642, JC3V2_0_01412, nad11, pyd3, vatA, vps32 58 structure 1 6 genes: BC4V2_0_00222, BC5V2_0_00758, aprA, gefK, geneDDB0231738, vatA 59 structure 1 7 genes: BC5V2_0_00161, BC5V2_0_01339, geneDDB0230050, geneDDB0234050, numA, sec23, vatP 60 structure 1 6 genes: BC4V2_0_01154, BEC6V2_0_00817, gbpD, geneDDB0233551, prpf39, srfC 61 structure 1 9 genes: BC4V2_0_00562, BC4V2_0_00736, BC4V2_0_01091, BC5V2_0_00642, JC3V2_0_01412, geneDDB0233646, nad11, pyd3, vatA 62 structure 1 6 genes: BC4V2_0_01091, BC5V2_0_00642, JC2V2_0_01281, rps27, vatA, vatD 63 structure 1 7 genes: CYP520B1, JC2V2_0_03281, JC3V2_0_00455, ints6, lvsF, ost1, thoc2 64 structure 1 12 genes: BC4V2_0_01781, BC5V2_0_00758, BC5V2_0_00822, BC5V2_0_00904, BC5V2_0_01735, abcB3, ctxA, gdt7, gefK, geneDDB0233289, gpaD, trrA Number of genes listed: 223

Query for a group of genes. Learn about how the analysis was done.