An Online Informatics Resource for Dictyostelium
  Search dictyBase:
use * as a wildcard character
Genome Browser BLAST dictyMart Stock Center Research Tools Help Links Contact Us

The regulatory region of smc2

dictyBase Home >> Chromosome 4:2050903..2055292 >> Gene: smc2 >> Regulatory Region
Regulatory region snapshot
Description of the computationally inferred structure of gene regulatory sequence elements

Motif appears at position -960 to -361 relative to the ATG AND
motif appears at position -920 to -161 relative to the ATG.

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
ATTGGTA|CGGAACCAGCA|GTCAATG (smc2) in nonsense dir., at pos. -904, p: 1.15e-07

This motif does not match any known binding sites.

Motif appears at these position(s): 
TAAGAAA|GGTGTAAATTG|TATATAT (smc2) in sense dir., at pos. -222, p: 1.07e-06
This motif matches the following known binding sites:
  • Y$RPL3_02 - rpL3 (ribosomal protein L3, TCM1), bound by: TAF
  • see details about this motif
    • Explore this gene further
  • List all inferred regulatory region structures that include this gene using yakA- pufA- data.
  • Look at genes with similar expression patterns and regulatory domain structure.
  • This regulatory region structure was inferred using yakA- pufA- gene expression data. Look at structures inferred using other data (click on the panel with the gene expression of interest below).


    • Query for a group of genes. Learn about how the analysis was done.
    Return to Home Supported by NIH (NIGMS and NHGRI) Send a Message to the dictyBase Curators