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The regulatory region of ndrC

dictyBase Home >> Chromosome 4:2493133..2498551 >> Gene: ndrC >> Regulatory Region
Regulatory region snapshot
Description of the computationally inferred structure of gene regulatory sequence elements

Motif appears at position -1000 to -241 relative to the ATG AND
motif appears at position -960 to -1 relative to the ATG.

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
AGTTCTA|ATTGGCTCTTGTCT|TTCTCTG (ndrC) in sense dir., at pos. -861, p: 2.96e-08

This motif does not match any known binding sites.

Motif appears at these position(s): 
TTGCACC|TCTTTTACGTG|CAAAGTT (ndrC) in sense dir., at pos. -931, p: 3.12e-06
This motif matches the following known binding sites:
  • RFX$CONS - consensus., bound by: RFX1, RFX1, RFX2, RFX2, RFX3, RFX3
  • MOUSE$M2IAB_03 - I-Abeta (MHC class II I-Abeta)
  • see details about this motif
    • Explore this gene further
  • List all inferred regulatory region structures that include this gene using yakA- pufA- data.
  • Look at genes with similar expression patterns and regulatory domain structure.
  • This regulatory region structure was inferred using yakA- pufA- gene expression data. Look at structures inferred using other data (click on the panel with the gene expression of interest below).


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