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The regulatory region of rcnA

dictyBase Home >> Chromosome 2:541649..543599 >> Gene: rcnA >> Regulatory Region
Regulatory region snapshot
Description of the computationally inferred structure of gene regulatory sequence elements

Motif appears at position -520 to -1 relative to the ATG AND
motif appears at position -840 to -321 relative to the ATG.

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
ATTAATA|CATTCACACACAAAA|AATAAAA (rcnA) in sense dir., at pos. -316, p: 1.33e-07

This motif does not match any known binding sites.

Motif appears at these position(s): 
CCACACT|CACACACTTAAATAT|AAATATA (rcnA) in sense dir., at pos. -537, p: 1.99e-06
This motif matches the following known binding sites:
  • PARS$PR12_01 - PR1-2 (pathogen related protein 1-2), bound by: WRKY1, WRKY2, WRKY3
  • CHICK$HOX14_01 - Chox-1.4, bound by: HOXA4
  • see details about this motif
    • Explore this gene further
  • List all inferred regulatory region structures that include this gene using yakA- pufA- data.
  • Look at genes with similar expression patterns and regulatory domain structure.
  • This regulatory region structure was inferred using yakA- pufA- gene expression data. Look at structures inferred using other data (click on the panel with the gene expression of interest below).


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