|
Listed are 3 possible structures of the regulatory region inferred using yakA- pufA- gene expression data.
|
|
|
|
Motif  appears at position -520 to -1 relative to the ATG AND
motif  appears at position -840 to -321 relative to the ATG.
|
|
Motif appears at these position(s):
AACAAAT|TACACACACACAAAA|ATAGATT (ino1) in sense dir., at pos. -341, p: 1.33e-07
This motif does not match any known binding sites.
Motif appears at these position(s):
AATTACA|CACACACAAAAATAG|ATTTTTT (ino1) in sense dir., at pos. -337, p: 7.31e-08
This motif matches the following known binding sites:
PARS$PR12_01 - PR1-2 (pathogen related protein 1-2), bound by: WRKY1, WRKY2, WRKY3
CHICK$HOX14_01 - Chox-1.4, bound by: HOXA4
see details about this motif
|
Look at genes with similar expression patterns and regulatory domain structure.
|
|
|
|
Motif  appears in sense direction at position -560 to -441 relative to the ATG.
|
|
Motif appears at these position(s):
ATTATCA|AAAACCAAACCACA|TTAAATT (ino1) in sense dir., at pos. -502, p: 9.14e-07
This motif does not match any known binding sites.
|
Look at genes with similar expression patterns and regulatory domain structure.
|
|
|
|
Motif  appears in sense direction at position -920 to -161 relative to the ATG.
|
|
Motif appears at these position(s):
CTTTTAA|AAATTTTGCAATGC|TGGAAAT (ino1) in sense dir., at pos. -296, p: 6.37e-07
This motif does not match any known binding sites.
|
|
Look at genes with similar expression patterns and regulatory domain structure.
|
|
