An Online Informatics Resource for Dictyostelium
  Search dictyBase:
use * as a wildcard character
Genome Browser BLAST dictyMart Stock Center Research Tools Help Links Contact Us

Structure of the BC4V2_0_01482 regulatory region

Listed are 6 possible structures of the regulatory region inferred using yakA- pufA- gene expression data.

Structure #1

Motif appears at position -920 to -1 relative to the ATG AND
motif appears at position -400 to -81 relative to the ATG.

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
TCACCCG|CAAACACACCAAA|TACACAC (BC4V2_0_01482) in sense dir., at pos. -215, p: 5.04e-08

This motif does not match any known binding sites.

Motif appears at these position(s): 
TCACCCG|CAAACACACCA|AATACAC (BC4V2_0_01482) in sense dir., at pos. -215, p: 2.91e-07

This motif does not match any known binding sites.

  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #2

    Motif appears in sense direction at position -560 to -441 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    AAAAATA|AAAACCACAACAGC|AACAAAT (BC4V2_0_01482) in sense dir., at pos. -531, p: 1.24e-07

    This motif does not match any known binding sites.

  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #3

    Motif appears in sense direction at position -560 to -441 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    AAAACCA|CAACAGCAACAAA|TCACACC (BC4V2_0_01482) in sense dir., at pos. -524, p: 6.56e-08

    This motif does not match any known binding sites.

  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #4

    Motif appears at position -600 to -161 relative to the ATG AND
    motif appears in nonsense direction at position -560 to -161 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    ACACATA|AAATGGTTTGG|AACTGTG (BC4V2_0_01482) in nonsense dir., at pos. -191, p: 2.06e-06
    This motif matches the following known binding sites:
  • MOUSE$IGH_51 - IgH (immunoglobulin heavy chain), bound by: NF-muNR
  • DROME$TLL_09, bound by: Bcd
  • see details about this motif
  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #5

    Motif appears at position -1000 to -601 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    TCATTTT|CTCAAAACATCTA|AATTTTT (BC4V2_0_01482) in nonsense dir., at pos. -803, p: 3.9e-06
    This motif matches the following known binding sites:
  • AS$AGL3_50 - artificial sequence., bound by: AGL3
  • AS$AGL3_98 - artificial sequence., bound by: AGL3
  • see details about this motif
  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #6

    Motif appears at position -880 to -561 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    TCATTTT|CTCAAAACATCTA|AATTTTT (BC4V2_0_01482) in nonsense dir., at pos. -803, p: 3.9e-06
    This motif matches the following known binding sites:
  • AS$AGL3_50 - artificial sequence., bound by: AGL3
  • AS$AGL3_98 - artificial sequence., bound by: AGL3
  • see details about this motif
  • Look at genes with similar expression patterns and regulatory domain structure.
    • Query for a group of genes. Learn about how the analysis was done.
    Return to Home Supported by NIH (NIGMS and NHGRI) Send a Message to the dictyBase Curators