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Listed are 3 possible structures of the regulatory region inferred using yakA- pufA- gene expression data.
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Motif  appears in sense direction at position -560 to -441 relative to the ATG.
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Motif appears at these position(s):
TCACAAC|AAATTCAAAACACC|AAAAGTT (JC1V2_0_00657) in sense dir., at pos. -492, p: 9.4e-07
This motif does not match any known binding sites.
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Look at genes with similar expression patterns and regulatory domain structure.
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Motif  appears at position -760 to -641 relative to the ATG.
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Motif appears at these position(s):
TGTTTGC|CCCCCATTGTTTTTT|CCTAAAA (JC1V2_0_00657) in sense dir., at pos. -749, p: 1.87e-06
This motif does not match any known binding sites.
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Look at genes with similar expression patterns and regulatory domain structure.
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Motif  appears in sense direction at position -560 to -161 relative to the ATG.
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Motif appears at these position(s):
TTAATAT|GGGGTTCA|TTTTTTT (JC1V2_0_00657) in sense dir., at pos. -165, p: 2.2e-07
This motif matches the following known binding sites:
HS$CABD9_01 - CaBD9 (calbindin D-9K), bound by: RXR-alpha, VDR
AS$ISRE_02 - artificial sequence (artificial ISRE)., bound by: Blimp-1, IRF-1
see details about this motif
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Look at genes with similar expression patterns and regulatory domain structure.
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