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Structure of the JC1V2_0_01320 regulatory region

Listed are 3 possible structures of the regulatory region inferred using yakA- pufA- gene expression data.

Structure #1

Motif appears at position -520 to -1 relative to the ATG AND
motif appears at position -840 to -321 relative to the ATG.

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
ATTTTGT|CACTCCCACACAAAA|AATTCAC (JC1V2_0_01320) in nonsense dir., at pos. -307, p: 9.72e-09

This motif does not match any known binding sites.

Motif appears at these position(s): 
CCACTCC|CACACACAAAAATTT|TCTTTTT (JC1V2_0_01320) in nonsense dir., at pos. -364, p: 1.99e-06
This motif matches the following known binding sites:
  • PARS$PR12_01 - PR1-2 (pathogen related protein 1-2), bound by: WRKY1, WRKY2, WRKY3
  • CHICK$HOX14_01 - Chox-1.4, bound by: HOXA4
  • see details about this motif
  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #2

    Motif appears at position -960 to -1 relative to the ATG AND
    motif appears in nonsense direction at position -960 to -321 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    TACATTT|CACCCAC|TCCCACA (JC1V2_0_01320) in nonsense dir., at pos. -346, p: 5.22e-07
    This motif matches the following known binding sites:
  • BACU$BACV_01 - BACV (baculovirus), bound by: IE1
  • RAT$CYCS_01 - cyt C (somatic cytochrome C), bound by: ATF
  • see details about this motif
    • Motif appears at these position(s): 
    ATTTCAC|CCACTCCCAC|ACACAAA (JC1V2_0_01320) in nonsense dir., at pos. -352, p: 3.68e-08
    This motif matches the following known binding sites:
  • RABBIT$UG_12 - Ug (uteroglobin)
  • see details about this motif
  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #3

    Motif appears at position -960 to -41 relative to the ATG AND
    motif appears at position -720 to -81 relative to the ATG AND
    motif appears at position -720 to -561 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    GGTGTTA|TATTTTTTTTTGGTA|ATTTTTT (JC1V2_0_01320) in nonsense dir., at pos. -617, p: 2.73e-06

    This motif does not match any known binding sites.

  • Look at genes with similar expression patterns and regulatory domain structure.
    • Query for a group of genes. Learn about how the analysis was done.
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