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Structure of the geneDDB0233462 regulatory region

Listed are 5 possible structures of the regulatory region inferred using yakA- pufA- gene expression data.

Structure #1

Motif appears at position -1000 to -81 relative to the ATG AND
motif appears at position -1000 to -441 relative to the ATG.

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
AAAAAAC|ACACCACC|AAAACTA (geneDDB0233462) in sense dir., at pos. -451, p: 2.2e-07
This motif matches the following known binding sites:
  • CHICK$ACRA_04 - AChR alpha (acetylcholine receptor, alpha-subunit), bound by: MyoD
  • BPV1$BPV1_18 - BPV-1 (bovine papilloma virus-1), bound by: E2
  • see details about this motif
    • Motif appears at these position(s): 
    AAAACAC|ACCACCAAAAC|TATTTTT (geneDDB0233462) in sense dir., at pos. -449, p: 6.48e-08

    This motif does not match any known binding sites.

  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #2

    Motif appears in nonsense direction at position -320 to -81 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    GAAGAAT|GGACCACTTGG|GTTTTTA (geneDDB0233462) in nonsense dir., at pos. -319, p: 6.65e-07
    This motif matches the following known binding sites:
  • PARS$PR11_02 - PR1-1 (pathogen related protein 1-1), bound by: WRKY1, WRKY2, WRKY3
  • see details about this motif
  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #3

    Motif appears in sense direction at position -560 to -441 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    ACACATA|AAAAACACACCACC|AAAACTA (geneDDB0233462) in sense dir., at pos. -457, p: 1.31e-07

    This motif does not match any known binding sites.

  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #4

    Motif appears at position -680 to -401 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    AAAAACC|CAAGTGATTCTTTC|TTCAAAA (geneDDB0233462) in sense dir., at pos. -409, p: 1.73e-06

    This motif does not match any known binding sites.

  • Look at genes with similar expression patterns and regulatory domain structure.

    • Structure #5

    Motif appears at position -1000 to -401 relative to the ATG AND
    motif appears in sense direction at position -960 to -441 relative to the ATG.

    Detailed description of sequence elements (putative binding sites)
    Motif appears at these position(s): 
    ATTAAGT|TTGTCTTCATTTTGT|AAATATA (geneDDB0233462) in sense dir., at pos. -753, p: 7e-07

    This motif does not match any known binding sites.

  • Look at genes with similar expression patterns and regulatory domain structure.
    • Query for a group of genes. Learn about how the analysis was done.
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