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Listed are 2 possible structures of the regulatory region inferred using yakA- pufA- gene expression data.
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Motif  appears at position -520 to -1 relative to the ATG AND
motif  appears at position -840 to -321 relative to the ATG.
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Motif appears at these position(s):
ATAGAAT|CATTCCCACACAAAA|ACCAAAC (geneDDB0233731) in sense dir., at pos. -489, p: 9.39e-08
This motif does not match any known binding sites.
Motif appears at these position(s):
AAAACCA|AACACACATAAATAG|AAATTTT (geneDDB0233731) in sense dir., at pos. -470, p: 1.5e-06
This motif matches the following known binding sites:
PARS$PR12_01 - PR1-2 (pathogen related protein 1-2), bound by: WRKY1, WRKY2, WRKY3
CHICK$HOX14_01 - Chox-1.4, bound by: HOXA4
see details about this motif
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Look at genes with similar expression patterns and regulatory domain structure.
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Motif  appears at position -1000 to -721 relative to the ATG.
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Motif appears at these position(s):
AAAAGAA|AACAAATCCC|GATCTCA (geneDDB0233731) in sense dir., at pos. -866, p: 2.97e-07
This motif matches the following known binding sites:
MAIZE$ADH11S_06 - Adh1-1S (alcohol dehydrogenase 1, 1S allele), bound by: GCBP-1, Sp1
RICE$GLUB1_03 - GluB-1 (glutelin B-1), bound by: MYB5
see details about this motif
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Look at genes with similar expression patterns and regulatory domain structure.
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