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Structure of the rcnA regulatory region

Listed is the only one structure of the regulatory region inferred using yakA- pufA- gene expression data.

Structure #1

Motif appears at position -520 to -1 relative to the ATG AND
motif appears at position -840 to -321 relative to the ATG.

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
ATTAATA|CATTCACACACAAAA|AATAAAA (rcnA) in sense dir., at pos. -316, p: 1.33e-07

This motif does not match any known binding sites.

Motif appears at these position(s): 
CCACACT|CACACACTTAAATAT|AAATATA (rcnA) in sense dir., at pos. -537, p: 1.99e-06
This motif matches the following known binding sites:
  • PARS$PR12_01 - PR1-2 (pathogen related protein 1-2), bound by: WRKY1, WRKY2, WRKY3
  • CHICK$HOX14_01 - Chox-1.4, bound by: HOXA4
  • see details about this motif
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