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Genes with similar expression patterns and regulatory domain structures

Description of the computationally inferred structure of gene regulatory sequence elements
There are 9 genes that match this regulatory region structure and are co-regulated in the yakA- pufA- gene expression data:

Motif appears anywhere in the regulatory region AND
motif appears anywhere in the regulatory region AND
motif appears at position -960 to -561 relative to the ATG.

Regulatory region snapshot
CBP2 ( dictyBase Home >> Chromosome 1:872421..873254 >> Gene: CBP2 >> Regulatory Region )
JC1V2_0_01880 ( dictyBase Home >> Chromosome 1:872421..873254 >> Gene: CBP2 >> Regulatory Region )
JC2V2_0_00387 ( dictyBase Home >> Chromosome 1:872421..873254 >> Gene: CBP2 >> Regulatory Region )
JC3V2_0_00350 ( dictyBase Home >> Chromosome 1:872421..873254 >> Gene: CBP2 >> Regulatory Region )
cdp9 ( dictyBase Home >> Chromosome 1:872421..873254 >> Gene: CBP2 >> Regulatory Region )
dhkA ( dictyBase Home >> Chromosome 1:872421..873254 >> Gene: CBP2 >> Regulatory Region )
geneDDB0233343 ( dictyBase Home >> Chromosome 1:872421..873254 >> Gene: CBP2 >> Regulatory Region )
pwp2 ( dictyBase Home >> Chromosome 1:872421..873254 >> Gene: CBP2 >> Regulatory Region )
vti1A ( dictyBase Home >> Chromosome 1:872421..873254 >> Gene: CBP2 >> Regulatory Region )

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
ACATGTT|TGGGTACT|TGTAAAA (vti1A) in sense dir., at pos. -942, p: 2.59e-06
CTCTGTT|TGGGTACT|CTTTATT (geneDDB0233343) in sense dir., at pos. -916, p: 2.59e-06
AAGTCTT|TGGGTAAC|ATTTTTT (dhkA) in sense dir., at pos. -901, p: 2.59e-06
CAAAATT|TGGGTACT|GCGATAA (CBP2) in sense dir., at pos. -889, p: 2.59e-06
TATCATT|TGGGTACT|TATATTT (pwp2) in sense dir., at pos. -788, p: 2.59e-06
GAAAATT|TGGGTAAC|TGACTAT (JC2V2_0_00387) in nonsense dir., at pos. -746, p: 2.59e-06
TCATTAA|TGGGTACT|CTTTAAA (cdp9) in nonsense dir., at pos. -733, p: 2.59e-06
AACAATT|TGGGTAAC|ACAACCA (JC1V2_0_01880) in sense dir., at pos. -685, p: 2.59e-06
TGTGTTT|TGGGTACC|AAAGGGC (JC3V2_0_00350) in nonsense dir., at pos. -567, p: 2.2e-07
This motif matches the following known binding sites:
  • DROME$DPP_49, bound by: Dl
  • RAT$FABPI_02 - FABPI (intestinal fatty acid binding protein), bound by: C/EBPalpha
  • see details about this motif
    • Motif appears at these position(s): 
    CCACATG|TTTGGGTACT|TGTAAAA (vti1A) in sense dir., at pos. -944, p: 3.97e-07
ACCTCTG|TTTGGGTACT|CTTTATT (geneDDB0233343) in sense dir., at pos. -918, p: 3.97e-07
AAAAGTC|TTTGGGTAAC|ATTTTTT (dhkA) in sense dir., at pos. -903, p: 6.86e-07
GCCAAAA|TTTGGGTACT|GCGATAA (CBP2) in sense dir., at pos. -891, p: 3.97e-07
TCTATCA|TTTGGGTACT|TATATTT (pwp2) in sense dir., at pos. -790, p: 3.97e-07
TTGAAAA|TTTGGGTAAC|TGACTAT (JC2V2_0_00387) in nonsense dir., at pos. -746, p: 6.86e-07
GTAACAA|TTTGGGTAAC|ACAACCA (JC1V2_0_01880) in sense dir., at pos. -687, p: 6.86e-07
GTTGTGT|TTTGGGTACC|AAAGGGC (JC3V2_0_00350) in nonsense dir., at pos. -567, p: 4.64e-08
ATTCACA|TTTTGGTGCC|AGACCAG (cdp9) in sense dir., at pos. -280, p: 9.75e-07
    This motif matches the following known binding sites:
  • AT$ROT3_01 - rot3 (P450 gene), bound by: ANT
  • DROME$HSP23_06, bound by: BR
  • see details about this motif
    • Group gene expression

    Here you can see all gene expression profiles data for all genes in this group.


    Query for a group of genes. Learn about how the analysis was done.
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