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Genes with similar expression patterns and regulatory domain structures

Description of the computationally inferred structure of gene regulatory sequence elements
There are 10 genes that match this regulatory region structure and are co-regulated in the yakA- pufA- gene expression data:

Motif appears at position -960 to -81 relative to the ATG AND
motif appears anywhere in the regulatory region.

Regulatory region snapshot
BC5V2_0_00499 ( dictyBase Home >> Chromosome 5:1239917..1245677 >> Gene: DDB_G0288241 >> Regulatory Region )

DidioMp21 ( dictyBase Home >> Chromosome 5:1239917..1245677 >> Gene: DDB_G0288241 >> Regulatory Region )

HSPC300 ( dictyBase Home >> Chromosome 5:1239917..1245677 >> Gene: DDB_G0288241 >> Regulatory Region )

JC1V2_0_00381 ( dictyBase Home >> Chromosome 5:1239917..1245677 >> Gene: DDB_G0288241 >> Regulatory Region )

JC1V2_0_01186 ( dictyBase Home >> Chromosome 5:1239917..1245677 >> Gene: DDB_G0288241 >> Regulatory Region )

JC1V2_0_01577 ( dictyBase Home >> Chromosome 5:1239917..1245677 >> Gene: DDB_G0288241 >> Regulatory Region )

JC1V2_0_01880 ( dictyBase Home >> Chromosome 5:1239917..1245677 >> Gene: DDB_G0288241 >> Regulatory Region )

arpD ( dictyBase Home >> Chromosome 5:1239917..1245677 >> Gene: DDB_G0288241 >> Regulatory Region )

cenA ( dictyBase Home >> Chromosome 5:1239917..1245677 >> Gene: DDB_G0288241 >> Regulatory Region )

geneDDB0237510 ( dictyBase Home >> Chromosome 5:1239917..1245677 >> Gene: DDB_G0288241 >> Regulatory Region )

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s):
GTTTTTA|ACACCACC|CTTTACG (geneDDB0237510) in nonsense dir., at pos. -941, p: 2.2e-07
TGCTGCA|ACACCACC|ACAACCA (JC1V2_0_01880) in nonsense dir., at pos. -860, p: 2.2e-07
AACAGCA|ACACCACC|ACCAATC (BC5V2_0_00499) in nonsense dir., at pos. -811, p: 2.2e-07
AATTAAA|ACACCACC|AACACCA (JC1V2_0_01186) in sense dir., at pos. -653, p: 2.2e-07
CCTTTTT|ACACCACC|TTCATAA (JC1V2_0_01577) in sense dir., at pos. -625, p: 2.2e-07
CATACAA|ACACCACC|AAATAAA (cenA) in nonsense dir., at pos. -598, p: 2.2e-07
TAAACAA|ACACCACC|TGTGGAA (HSPC300) in nonsense dir., at pos. -584, p: 2.2e-07
AATATCA|ACACCACC|GACTCAT (arpD) in nonsense dir., at pos. -438, p: 2.2e-07
GTCGATG|ACACCACC|ATTGGGA (DidioMp21) in sense dir., at pos. -406, p: 2.2e-07
AAATTTC|ACACCACC|AGCCGGG (JC1V2_0_00381) in sense dir., at pos. -197, p: 2.2e-07
This motif matches the following known binding sites:
  • CHICK$ACRA_04 - AChR alpha (acetylcholine receptor, alpha-subunit), bound by: MyoD
  • BPV1$BPV1_18 - BPV-1 (bovine papilloma virus-1), bound by: E2
  • see details about this motif

  • Motif appears at these position(s):
    AATATTC|TCGATGATGGT|GATGATG (HSPC300) in sense dir., at pos. -883, p: 4.03e-07
    TCTGGTT|TCGCTGCTCGT|CAACCAT (geneDDB0237510) in sense dir., at pos. -799, p: 5.31e-07
    AAGTTAA|TCGCTGATGGT|GACAATA (JC1V2_0_01186) in sense dir., at pos. -790, p: 3.18e-07
    GGTGTAC|TACTTGATGCC|ATTAAAT (cenA) in sense dir., at pos. -678, p: 3.48e-06
    CCTTCAG|TAGCTGCTGCT|GATTGAG (arpD) in sense dir., at pos. -629, p: 3.3e-06
    TATGGTA|TCCATGATGGT|TATCTCC (JC1V2_0_01880) in sense dir., at pos. -610, p: 4.03e-07
    CCACACC|TAGATGATACC|ATCTTTT (JC1V2_0_01577) in nonsense dir., at pos. -547, p: 3.3e-06
    ATCACCG|TCGCTGATGCC|AAAAGAA (JC1V2_0_00381) in nonsense dir., at pos. -532, p: 3.49e-09
    AGTTGGA|TCGATGATACC|AGCTTGA (BC5V2_0_00499) in nonsense dir., at pos. -454, p: 1.29e-07
    GCTTTAA|TCGATGCTGCT|TCTGTCG (BC5V2_0_00499) in sense dir., at pos. -414, p: 1.73e-07
    AACAGCG|TCGATGACACC|ACCATTG (DidioMp21) in sense dir., at pos. -412, p: 6e-08
    
    This motif matches the following known binding sites:
  • NEUCR$CYS14_03 - cys-14 (sulfate permease II), bound by: CYS3
  • MOUSE$WAP_07 - WAP (whey acidic protein), bound by: MPBF, NF-1
  • see details about this motif
  • Group gene expression

    Here you can see all gene expression profiles data for all genes in this group.


    Query for a group of genes. Learn about how the analysis was done.