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Genes with similar expression patterns and regulatory domain structures

Description of the computationally inferred structure of gene regulatory sequence elements
There are 8 genes that match this regulatory region structure and are co-regulated in the yakA- pufA- gene expression data:

Motif appears at position -1000 to -81 relative to the ATG AND
motif appears at position -1000 to -441 relative to the ATG.

Regulatory region snapshot
Contig0566_00003 ( dictyBase Home >> Chromosome 6:3374796..3375787 >> Gene: DDB_G0293840 >> Regulatory Region )

JC3V2_0_00907 ( dictyBase Home >> Chromosome 6:3374796..3375787 >> Gene: DDB_G0293840 >> Regulatory Region )

clcD ( dictyBase Home >> Chromosome 6:3374796..3375787 >> Gene: DDB_G0293840 >> Regulatory Region )

geneDDB0231388 ( dictyBase Home >> Chromosome 6:3374796..3375787 >> Gene: DDB_G0293840 >> Regulatory Region )

geneDDB0233462 ( dictyBase Home >> Chromosome 6:3374796..3375787 >> Gene: DDB_G0293840 >> Regulatory Region )

geneDDB0237660 ( dictyBase Home >> Chromosome 6:3374796..3375787 >> Gene: DDB_G0293840 >> Regulatory Region )

lsm3 ( dictyBase Home >> Chromosome 6:3374796..3375787 >> Gene: DDB_G0293840 >> Regulatory Region )

vti1A ( dictyBase Home >> Chromosome 6:3374796..3375787 >> Gene: DDB_G0293840 >> Regulatory Region )

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s):
TGTATTT|ACACCACC|AAAACAA (lsm3) in nonsense dir., at pos. -980, p: 2.2e-07
ATCCACA|ACACCACC|AATAATT (JC3V2_0_00907) in nonsense dir., at pos. -914, p: 2.2e-07
GCAATCA|ACACCACC|ACCACAA (geneDDB0237660) in sense dir., at pos. -541, p: 2.2e-07
AAAAAAC|ACACCACC|AAAACTA (geneDDB0233462) in sense dir., at pos. -451, p: 2.2e-07
CACTTAT|ACACCACC|CAAACAC (Contig0566_00003) in sense dir., at pos. -451, p: 2.2e-07
TATATAT|ACACCACC|CCTCTTA (geneDDB0231388) in sense dir., at pos. -380, p: 2.2e-07
ACGAGAT|ACACCACC|CATGAAG (clcD) in nonsense dir., at pos. -371, p: 2.2e-07
TTGAAAC|ACACCACC|ACGCTAT (vti1A) in sense dir., at pos. -210, p: 2.2e-07
This motif matches the following known binding sites:
  • CHICK$ACRA_04 - AChR alpha (acetylcholine receptor, alpha-subunit), bound by: MyoD
  • BPV1$BPV1_18 - BPV-1 (bovine papilloma virus-1), bound by: E2
  • see details about this motif

  • Motif appears at these position(s):
    TATTTAC|ACCACCAAAAC|AAATTAA (lsm3) in nonsense dir., at pos. -985, p: 6.48e-08
    AAAAAGA|ACCACCAAAAC|TTTTTTT (vti1A) in sense dir., at pos. -738, p: 6.48e-08
    TTTTTTT|ACCCCCCAAAC|CGCAAGG (geneDDB0231388) in nonsense dir., at pos. -677, p: 2.49e-08
    AAAAAAA|ACCACAAAAAC|AATATAA (JC3V2_0_00907) in nonsense dir., at pos. -545, p: 1.66e-07
    AACATCC|ACCACCAAAAC|CACAACA (geneDDB0237660) in sense dir., at pos. -500, p: 6.48e-08
    ATGGTAA|ACCACCAAACC|TACGAAA (clcD) in nonsense dir., at pos. -455, p: 1.66e-07
    CTTATAC|ACCACCCAAAC|ACACCTA (Contig0566_00003) in sense dir., at pos. -449, p: 6.13e-09
    AAAACAC|ACCACCAAAAC|TATTTTT (geneDDB0233462) in sense dir., at pos. -449, p: 6.48e-08
    

    This motif does not match any known binding sites.

    Group gene expression

    Here you can see all gene expression profiles data for all genes in this group.


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