An Online Informatics Resource for Dictyostelium
  Search dictyBase:
use * as a wildcard character
Genome Browser BLAST dictyMart Stock Center Research Tools Help Links Contact Us

Genes with similar expression patterns and regulatory domain structures

Description of the computationally inferred structure of gene regulatory sequence elements
There are 6 genes that match this regulatory region structure and are co-regulated in the yakA- pufA- gene expression data:

Motif appears in sense direction at position -560 to -441 relative to the ATG.

Regulatory region snapshot
BC4V2_0_01482 ( dictyBase Home >> Chromosome 4:3762634..3765191 >> Gene: BC4V2_0_01482 >> Regulatory Region )
BC4V2_0_01939 ( dictyBase Home >> Chromosome 4:3762634..3765191 >> Gene: BC4V2_0_01482 >> Regulatory Region )
JC1V2_0_00657 ( dictyBase Home >> Chromosome 4:3762634..3765191 >> Gene: BC4V2_0_01482 >> Regulatory Region )
geneDDB0233462 ( dictyBase Home >> Chromosome 4:3762634..3765191 >> Gene: BC4V2_0_01482 >> Regulatory Region )
ino1 ( dictyBase Home >> Chromosome 4:3762634..3765191 >> Gene: BC4V2_0_01482 >> Regulatory Region )
rasS ( dictyBase Home >> Chromosome 4:3762634..3765191 >> Gene: BC4V2_0_01482 >> Regulatory Region )

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
AAAAATA|AAAACCACAACAGC|AACAAAT (BC4V2_0_01482) in sense dir., at pos. -531, p: 1.24e-07
ATTATCA|AAAACCAAACCACA|TTAAATT (ino1) in sense dir., at pos. -502, p: 9.14e-07
AAAATCA|CAAAACACACCACC|TTAAAAA (BC4V2_0_01939) in sense dir., at pos. -499, p: 8.54e-08
TCACAAC|AAATTCAAAACACC|AAAAGTT (JC1V2_0_00657) in sense dir., at pos. -492, p: 9.4e-07
AAAAAAA|AAATACAAACCACC|ACCAATC (BC4V2_0_01939) in sense dir., at pos. -473, p: 4.08e-07
AAGCAAT|CAAAACAAAACTCC|TCACCAC (rasS) in sense dir., at pos. -461, p: 9.14e-07
ACACATA|AAAAACACACCACC|AAAACTA (geneDDB0233462) in sense dir., at pos. -457, p: 1.31e-07

This motif does not match any known binding sites.

Group gene expression

Here you can see all gene expression profiles data for all genes in this group.


Query for a group of genes. Learn about how the analysis was done.
Return to Home Supported by NIH (NIGMS and NHGRI) Send a Message to the dictyBase Curators