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Genes with similar expression patterns and regulatory domain structures

Description of the computationally inferred structure of gene regulatory sequence elements
There are 6 genes that match this regulatory region structure and are co-regulated in the yakA- pufA- gene expression data:

Motif appears at position -520 to -1 relative to the ATG AND
motif appears at position -840 to -321 relative to the ATG.

Regulatory region snapshot
BC4V2_0_00086 ( dictyBase Home >> Chromosome 4:206428..208370 >> Gene: BC4V2_0_00086 >> Regulatory Region )
JC1V2_0_01320 ( dictyBase Home >> Chromosome 4:206428..208370 >> Gene: BC4V2_0_00086 >> Regulatory Region )
JC1V2_0_01880 ( dictyBase Home >> Chromosome 4:206428..208370 >> Gene: BC4V2_0_00086 >> Regulatory Region )
geneDDB0233731 ( dictyBase Home >> Chromosome 4:206428..208370 >> Gene: BC4V2_0_00086 >> Regulatory Region )
ino1 ( dictyBase Home >> Chromosome 4:206428..208370 >> Gene: BC4V2_0_00086 >> Regulatory Region )
rcnA ( dictyBase Home >> Chromosome 4:206428..208370 >> Gene: BC4V2_0_00086 >> Regulatory Region )

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
ATAGAAT|CATTCCCACACAAAA|ACCAAAC (geneDDB0233731) in sense dir., at pos. -489, p: 9.39e-08
AACAAAT|TACACACACACAAAA|ATAGATT (ino1) in sense dir., at pos. -341, p: 1.33e-07
ATTAATA|CATTCACACACAAAA|AATAAAA (rcnA) in sense dir., at pos. -316, p: 1.33e-07
ATTTTGT|CACTCCCACACAAAA|AATTCAC (JC1V2_0_01320) in nonsense dir., at pos. -307, p: 9.72e-09
ATTAAAA|CACACACATACAATA|AATTTTT (JC1V2_0_01880) in sense dir., at pos. -146, p: 1.05e-07
ACTCCAC|CATTTCCACACAAAA|TTCACAT (BC4V2_0_00086) in sense dir., at pos. -74, p: 1.05e-07

This motif does not match any known binding sites.

Motif appears at these position(s): 
GAAAGTG|AGATCTCTAATATGG|AGTAACC (JC1V2_0_01880) in nonsense dir., at pos. -801, p: 8.27e-07
CCACACT|CACACACTTAAATAT|AAATATA (rcnA) in sense dir., at pos. -537, p: 1.99e-06
AAAACCA|AACACACATAAATAG|AAATTTT (geneDDB0233731) in sense dir., at pos. -470, p: 1.5e-06
CCACTCC|CACACACAAAAATTT|TCTTTTT (JC1V2_0_01320) in nonsense dir., at pos. -364, p: 1.99e-06
AATTACA|CACACACAAAAATAG|ATTTTTT (ino1) in sense dir., at pos. -337, p: 7.31e-08
CCTCCTT|CAATCACTAAAATTG|AATATAA (BC4V2_0_00086) in sense dir., at pos. -333, p: 8.27e-07
This motif matches the following known binding sites:
  • PARS$PR12_01 - PR1-2 (pathogen related protein 1-2), bound by: WRKY1, WRKY2, WRKY3
  • CHICK$HOX14_01 - Chox-1.4, bound by: HOXA4
  • see details about this motif
    • Group gene expression

    Here you can see all gene expression profiles data for all genes in this group.


    Query for a group of genes. Learn about how the analysis was done.
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