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Genes with similar expression patterns and regulatory domain structures

Description of the computationally inferred structure of gene regulatory sequence elements
There are 9 genes that match this regulatory region structure and are co-regulated in the yakA- pufA- gene expression data:

Motif appears in sense direction at position -800 to -161 relative to the ATG AND
motif appears in sense direction at position -720 to -601 relative to the ATG.

Regulatory region snapshot
BC4V2_0_00086 ( dictyBase Home >> Chromosome 4:206567..208231 >> Gene: DDB_G0283091 >> Regulatory Region )
BC5V2_0_01541 ( dictyBase Home >> Chromosome 4:206567..208231 >> Gene: DDB_G0283091 >> Regulatory Region )
BC5V2_0_01798 ( dictyBase Home >> Chromosome 4:206567..208231 >> Gene: DDB_G0283091 >> Regulatory Region )
JC1V2_0_00626 ( dictyBase Home >> Chromosome 4:206567..208231 >> Gene: DDB_G0283091 >> Regulatory Region )
JC3V2_0_01940 ( dictyBase Home >> Chromosome 4:206567..208231 >> Gene: DDB_G0283091 >> Regulatory Region )
geneDDB0231388 ( dictyBase Home >> Chromosome 4:206567..208231 >> Gene: DDB_G0283091 >> Regulatory Region )
geneDDB0234207 ( dictyBase Home >> Chromosome 4:206567..208231 >> Gene: DDB_G0283091 >> Regulatory Region )
ndkM ( dictyBase Home >> Chromosome 4:206567..208231 >> Gene: DDB_G0283091 >> Regulatory Region )
rsmD ( dictyBase Home >> Chromosome 4:206567..208231 >> Gene: DDB_G0283091 >> Regulatory Region )

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
TTATTAA|GCGGTAAATGG|AAAAAAA (BC5V2_0_01541) in sense dir., at pos. -700, p: 7.32e-07
GTCGATT|GAGGCAGGTGC|ATTACCA (BC4V2_0_00086) in sense dir., at pos. -688, p: 3.74e-07
TACATTA|TAGGTAAGTGG|TAAATTA (JC1V2_0_00626) in sense dir., at pos. -682, p: 6e-07
GTGCCTT|GCGGTTTGGGG|GGTAAAA (geneDDB0231388) in sense dir., at pos. -680, p: 3.33e-07
TTATTTA|TAGGTTAGTGG|TAGTGGG (geneDDB0234207) in sense dir., at pos. -678, p: 6e-07
TATATAT|GCTGTTAGTGC|TCTTTTT (BC5V2_0_01798) in sense dir., at pos. -666, p: 7.32e-07
TAGGGGT|GTGGTTTGTGG|AACTACT (rsmD) in sense dir., at pos. -653, p: 2.48e-07
ATGGGAG|GAGGTAAGTGG|AGGTGCG (ndkM) in sense dir., at pos. -642, p: 8.11e-08
TCCCAGA|TTGGTTAGTGG|TGTTTTT (JC3V2_0_01940) in sense dir., at pos. -640, p: 6e-07
This motif matches the following known binding sites:
  • DROME$DDC_15, bound by: BR
  • see details about this motif
    • Group gene expression

    Here you can see all gene expression profiles data for all genes in this group.


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