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Genes with similar expression patterns and regulatory domain structures

Description of the computationally inferred structure of gene regulatory sequence elements
There are 11 genes that match this regulatory region structure and are co-regulated in the yakA- pufA- gene expression data:

Motif appears at position -1000 to -281 relative to the ATG AND
motif appears in sense direction at position -1000 to -761 relative to the ATG.

Regulatory region snapshot
BC4V2_0_00086 ( dictyBase Home >> Chromosome 4:206567..208231 >> Gene: DDB_G0283091 >> Regulatory Region )
BC5V2_0_00499 ( dictyBase Home >> Chromosome 4:206567..208231 >> Gene: DDB_G0283091 >> Regulatory Region )
BEC6V2_0_00299 ( dictyBase Home >> Chromosome 4:206567..208231 >> Gene: DDB_G0283091 >> Regulatory Region )
BEC6V2_0_00512 ( dictyBase Home >> Chromosome 4:206567..208231 >> Gene: DDB_G0283091 >> Regulatory Region )
CSN2 ( dictyBase Home >> Chromosome 4:206567..208231 >> Gene: DDB_G0283091 >> Regulatory Region )
JC1V2_0_01263 ( dictyBase Home >> Chromosome 4:206567..208231 >> Gene: DDB_G0283091 >> Regulatory Region )
JC2V2_0_00494 ( dictyBase Home >> Chromosome 4:206567..208231 >> Gene: DDB_G0283091 >> Regulatory Region )
JC2V2_0_01137 ( dictyBase Home >> Chromosome 4:206567..208231 >> Gene: DDB_G0283091 >> Regulatory Region )
JC3V2_0_00799 ( dictyBase Home >> Chromosome 4:206567..208231 >> Gene: DDB_G0283091 >> Regulatory Region )
JC3V2_0_02336 ( dictyBase Home >> Chromosome 4:206567..208231 >> Gene: DDB_G0283091 >> Regulatory Region )
pkiA ( dictyBase Home >> Chromosome 4:206567..208231 >> Gene: DDB_G0283091 >> Regulatory Region )

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
AATCCTC|TTCGAGTTGG|GTGTTTG (BEC6V2_0_00512) in sense dir., at pos. -991, p: 2.53e-06
GGTGATT|TTCCAGATGG|AATTGAA (BC4V2_0_00086) in sense dir., at pos. -984, p: 8.71e-07
AGTATTT|TCAGTGCCCG|TTTCTTA (JC3V2_0_00799) in sense dir., at pos. -978, p: 1.94e-06
AGAACTA|TTCCAGATGG|TAAAAAT (CSN2) in sense dir., at pos. -964, p: 8.71e-07
AAATTTA|TCCCAGCCAA|AAAAAAA (BEC6V2_0_00299) in sense dir., at pos. -958, p: 2.53e-06
TCAACAA|TTCCAGTTGG|TGGGTCC (JC1V2_0_01263) in sense dir., at pos. -956, p: 8.71e-07
ATTGAAT|TTCCAGATGG|CACTGAT (JC2V2_0_01137) in sense dir., at pos. -921, p: 8.71e-07
TTCTCTT|TCCCAGATGG|TATTCAA (pkiA) in sense dir., at pos. -824, p: 6.29e-07
GCTGTTA|TTCGTGTCGG|TGGAGCT (BC5V2_0_00499) in sense dir., at pos. -795, p: 1.2e-06
ATCTCTG|TTCCAGTTGG|TAAATAG (JC2V2_0_00494) in sense dir., at pos. -794, p: 8.71e-07
TATACTA|TTCCAGTTGG|TACATTA (JC3V2_0_02336) in sense dir., at pos. -767, p: 8.71e-07
This motif matches the following known binding sites:
  • HS$P53_03 - p53, bound by: Pax-2, Pax-5, Pax-8
  • HS$A1ANTR_01 - AAT (alpha1-antitrypsin), bound by: HNF-4alpha1, HNF-4alpha1, HNF-4alpha2, LF-A1
  • see details about this motif
    • Group gene expression

    Here you can see all gene expression profiles data for all genes in this group.


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