An Online Informatics Resource for Dictyostelium
  Search dictyBase:
use * as a wildcard character
Genome Browser BLAST dictyMart Stock Center Research Tools Help Links Contact Us

Genes with similar expression patterns and regulatory domain structures

Description of the computationally inferred structure of gene regulatory sequence elements
There are 12 genes that match this regulatory region structure and are co-regulated in the yakA- pufA- gene expression data:

Motif appears at position -760 to -161 relative to the ATG AND
motif appears in sense direction at position -760 to -401 relative to the ATG.

Regulatory region snapshot
JC1V2_0_01250 ( dictyBase Home >> Chromosome 1:3131289..3134422 >> Gene: DDB_G0269608 >> Regulatory Region )
JC1V2_0_01880 ( dictyBase Home >> Chromosome 1:3131289..3134422 >> Gene: DDB_G0269608 >> Regulatory Region )
JC2V2_0_02467 ( dictyBase Home >> Chromosome 1:3131289..3134422 >> Gene: DDB_G0269608 >> Regulatory Region )
JC3V2_0_00081 ( dictyBase Home >> Chromosome 1:3131289..3134422 >> Gene: DDB_G0269608 >> Regulatory Region )
cofB ( dictyBase Home >> Chromosome 1:3131289..3134422 >> Gene: DDB_G0269608 >> Regulatory Region )
frmA ( dictyBase Home >> Chromosome 1:3131289..3134422 >> Gene: DDB_G0269608 >> Regulatory Region )
geneDDB0216309 ( dictyBase Home >> Chromosome 1:3131289..3134422 >> Gene: DDB_G0269608 >> Regulatory Region )
geneDDB0233396 ( dictyBase Home >> Chromosome 1:3131289..3134422 >> Gene: DDB_G0269608 >> Regulatory Region )
geneDDB0238005 ( dictyBase Home >> Chromosome 1:3131289..3134422 >> Gene: DDB_G0269608 >> Regulatory Region )
ndkM ( dictyBase Home >> Chromosome 1:3131289..3134422 >> Gene: DDB_G0269608 >> Regulatory Region )
rpl37A ( dictyBase Home >> Chromosome 1:3131289..3134422 >> Gene: DDB_G0269608 >> Regulatory Region )
sgmA ( dictyBase Home >> Chromosome 1:3131289..3134422 >> Gene: DDB_G0269608 >> Regulatory Region )

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
TGGAACA|CCTGTGTG|TTATTTG (JC2V2_0_02467) in sense dir., at pos. -753, p: 2.2e-07
TATCTAC|CCTTTGTG|AATTAAA (JC1V2_0_01880) in sense dir., at pos. -723, p: 1.41e-06
CATACCT|CCTTTGTG|TGGAATT (geneDDB0216309) in sense dir., at pos. -682, p: 1.41e-06
TTATTAT|CCTTTGTG|AAATGAT (cofB) in sense dir., at pos. -654, p: 1.41e-06
TCTGAAG|CCTGTGTG|AATGAAT (JC3V2_0_00081) in sense dir., at pos. -611, p: 2.2e-07
ATCTAAA|CCTTTGTG|GAAAAAA (sgmA) in sense dir., at pos. -599, p: 1.41e-06
TAATATG|CCTTTGTG|ATCACAT (ndkM) in sense dir., at pos. -512, p: 1.41e-06
TTAACAT|CCTGTGTG|GTGTTTT (geneDDB0238005) in sense dir., at pos. -472, p: 2.2e-07
GTGTGTG|CCTGTGTC|AATGTTT (frmA) in sense dir., at pos. -462, p: 1.63e-06
AAGCGCA|CCTGTGTG|ATTTTTA (geneDDB0233396) in sense dir., at pos. -446, p: 2.2e-07
ATGTTTA|CCTTTGTG|ACAACAA (rpl37A) in sense dir., at pos. -418, p: 1.41e-06
AGTTATA|CCTTTGTG|TTTTATA (JC1V2_0_01250) in sense dir., at pos. -415, p: 1.41e-06
This motif matches the following known binding sites:
  • XENLA$AC_04 - C-ACT (cardiac actin), bound by: EMF1, EMF2, EMF3, EMF4, Myf-5, MyoD
  • MOUSE$M2EAK_01 - Ekalpha (MHC class II Ekalpha)
  • see details about this motif
    • Group gene expression

    Here you can see all gene expression profiles data for all genes in this group.


    Query for a group of genes. Learn about how the analysis was done.
    Return to Home Supported by NIH (NIGMS and NHGRI) Send a Message to the dictyBase Curators