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Genes with similar expression patterns and regulatory domain structures

Description of the computationally inferred structure of gene regulatory sequence elements
There are 7 genes that match this regulatory region structure and are co-regulated in the yakA- pufA- gene expression data:

Motif appears at position -880 to -641 relative to the ATG.

Regulatory region snapshot
BC4V2_0_01456 ( dictyBase Home >> Chromosome 4:3703190..3705615 >> Gene: DDB_G0285823 >> Regulatory Region )
BC5V2_0_00415 ( dictyBase Home >> Chromosome 4:3703190..3705615 >> Gene: DDB_G0285823 >> Regulatory Region )
BC5V2_0_01380 ( dictyBase Home >> Chromosome 4:3703190..3705615 >> Gene: DDB_G0285823 >> Regulatory Region )
BC5V2_0_01690 ( dictyBase Home >> Chromosome 4:3703190..3705615 >> Gene: DDB_G0285823 >> Regulatory Region )
JC1V2_0_01880 ( dictyBase Home >> Chromosome 4:3703190..3705615 >> Gene: DDB_G0285823 >> Regulatory Region )
geneDDB0231512 ( dictyBase Home >> Chromosome 4:3703190..3705615 >> Gene: DDB_G0285823 >> Regulatory Region )
ndrC ( dictyBase Home >> Chromosome 4:3703190..3705615 >> Gene: DDB_G0285823 >> Regulatory Region )

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
CTCCTGA|CGAAGACGATT|TAATTTC (geneDDB0231512) in sense dir., at pos. -873, p: 8.52e-07
AAGTGAA|AGAAGACGATT|GCAAAGA (ndrC) in nonsense dir., at pos. -831, p: 1.12e-06
ATTTCAT|CGAAAACATCT|CTCCATT (BC5V2_0_01380) in nonsense dir., at pos. -786, p: 2.2e-06
CATTAAA|AGAAGACATCT|TTAAAAA (BC5V2_0_00415) in sense dir., at pos. -758, p: 3.2e-07
ATCAAAT|AGAAAACGTTT|ATTATCT (JC1V2_0_01880) in sense dir., at pos. -743, p: 4.12e-06
CAACAAA|AGAAAACATCT|CTAACTG (BC5V2_0_01690) in nonsense dir., at pos. -660, p: 4.12e-06
TTGATAA|AGAAGACATTT|GATTTTT (BC4V2_0_01456) in nonsense dir., at pos. -641, p: 7.99e-07

This motif does not match any known binding sites.

Group gene expression

Here you can see all gene expression profiles data for all genes in this group.


Query for a group of genes. Learn about how the analysis was done.
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