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Genes with similar expression patterns and regulatory domain structures

Description of the computationally inferred structure of gene regulatory sequence elements
There are 6 genes that match this regulatory region structure and are co-regulated in the yakA- pufA- gene expression data:

Motif appears at position -880 to -161 relative to the ATG AND
motif appears at position -920 to -401 relative to the ATG.

Regulatory region snapshot
BC4V2_0_00899 ( dictyBase Home >> Chromosome 4:2358612..2359059 >> Gene: DDB_G0284693 >> Regulatory Region )
JC1V2_0_01880 ( dictyBase Home >> Chromosome 4:2358612..2359059 >> Gene: DDB_G0284693 >> Regulatory Region )
JC1V2_0_01954 ( dictyBase Home >> Chromosome 4:2358612..2359059 >> Gene: DDB_G0284693 >> Regulatory Region )
act8 ( dictyBase Home >> Chromosome 4:2358612..2359059 >> Gene: DDB_G0284693 >> Regulatory Region )
ecmA ( dictyBase Home >> Chromosome 4:2358612..2359059 >> Gene: DDB_G0284693 >> Regulatory Region )
ufd1 ( dictyBase Home >> Chromosome 4:2358612..2359059 >> Gene: DDB_G0284693 >> Regulatory Region )

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
TGCTGCA|ACACCACC|ACAACCA (JC1V2_0_01880) in nonsense dir., at pos. -860, p: 2.2e-07
TGGTGCA|ACACCACC|ATCTTGA (ufd1) in sense dir., at pos. -838, p: 2.2e-07
CGATGGT|ACACCACC|ACCATCA (BC4V2_0_00899) in sense dir., at pos. -794, p: 2.2e-07
TGGATCT|ACACCACC|TTCTGGA (act8) in nonsense dir., at pos. -656, p: 2.2e-07
AAATTAT|ACACCACC|ACCATAA (ecmA) in sense dir., at pos. -610, p: 2.2e-07
AAATTCT|ACACCACC|ACGTCAT (JC1V2_0_01954) in sense dir., at pos. -416, p: 2.2e-07
This motif matches the following known binding sites:
  • CHICK$ACRA_04 - AChR alpha (acetylcholine receptor, alpha-subunit), bound by: MyoD
  • BPV1$BPV1_18 - BPV-1 (bovine papilloma virus-1), bound by: E2
  • see details about this motif
    • Motif appears at these position(s): 
    TGGTGGC|TCTCCACCCCC|ATCACAT (BC4V2_0_00899) in sense dir., at pos. -887, p: 7.79e-10
TATAAAA|TCACCAACCCC|CTCACGA (ecmA) in nonsense dir., at pos. -871, p: 1.66e-08
ATAAGAT|GCTGCAACACC|ACCACAA (JC1V2_0_01880) in nonsense dir., at pos. -857, p: 3.39e-08
ACCACTT|GGTGCAACACC|ACCATCT (ufd1) in sense dir., at pos. -844, p: 5.58e-08
GTATGGA|TCTACACCACC|TTCTGGA (act8) in nonsense dir., at pos. -656, p: 8.71e-08
ACCAAAT|TCTACACCACC|ACGTCAT (JC1V2_0_01954) in sense dir., at pos. -419, p: 8.71e-08

    This motif does not match any known binding sites.

    Group gene expression

    Here you can see all gene expression profiles data for all genes in this group.


    Query for a group of genes. Learn about how the analysis was done.
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