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Genes with similar expression patterns and regulatory domain structures

Description of the computationally inferred structure of gene regulatory sequence elements
There are 7 genes that match this regulatory region structure and are co-regulated in the yakA- pufA- gene expression data:

Motif appears at position -920 to -41 relative to the ATG AND
motif appears in nonsense direction at position -920 to -41 relative to the ATG AND
motif appears at position -880 to -41 relative to the ATG.

Regulatory region snapshot
BC5V2_0_00257 ( dictyBase Home >> Chromosome 5:616000..616777 >> Gene: DDB_G0287731 >> Regulatory Region )
JC2V2_0_01441 ( dictyBase Home >> Chromosome 5:616000..616777 >> Gene: DDB_G0287731 >> Regulatory Region )
JC3V2_0_01954 ( dictyBase Home >> Chromosome 5:616000..616777 >> Gene: DDB_G0287731 >> Regulatory Region )
cofA ( dictyBase Home >> Chromosome 5:616000..616777 >> Gene: DDB_G0287731 >> Regulatory Region )
pfdn3 ( dictyBase Home >> Chromosome 5:616000..616777 >> Gene: DDB_G0287731 >> Regulatory Region )
rasS ( dictyBase Home >> Chromosome 5:616000..616777 >> Gene: DDB_G0287731 >> Regulatory Region )
syn8B ( dictyBase Home >> Chromosome 5:616000..616777 >> Gene: DDB_G0287731 >> Regulatory Region )

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
ATTTAAA|GTGTGACAAAAG|AAAGAGA (cofA) in nonsense dir., at pos. -880, p: 4.87e-07
TATATGT|GTGAGATAAAAA|TAGAAAA (rasS) in nonsense dir., at pos. -798, p: 1.66e-06
CAAATTT|GTGAGATAAAAA|AAAAAAA (BC5V2_0_00257) in nonsense dir., at pos. -606, p: 1.66e-06
AAAAAGA|GTGAGATAAGAA|TAAAAAA (syn8B) in nonsense dir., at pos. -258, p: 1.04e-06
AGAGAGA|GTGAGAGAAAAG|CGAAAAT (pfdn3) in nonsense dir., at pos. -115, p: 2.16e-06
AAATTTT|GTGAGACAAAAA|AAAATTG (JC3V2_0_01954) in nonsense dir., at pos. -92, p: 2.39e-07
GAACAGA|GTGAGATAAAAA|AAAGTGT (JC2V2_0_01441) in nonsense dir., at pos. -47, p: 1.66e-06

This motif does not match any known binding sites.

Motif appears at these position(s): 
CTCTTTC|TTTTGTCACAC|TTTAAAT (cofA) in sense dir., at pos. -879, p: 1.43e-06
TTTCTAT|TTTTATCTCAC|ACATATA (rasS) in sense dir., at pos. -797, p: 1.1e-06
TTTTTTT|TTTTATCTCAC|AAATTTG (BC5V2_0_00257) in sense dir., at pos. -605, p: 1.1e-06
TTTTTAT|TCTTATCTCAC|TCTTTTT (syn8B) in sense dir., at pos. -257, p: 1.45e-07
TTTTCGC|TTTTCTCTCAC|TCTCTCT (pfdn3) in sense dir., at pos. -114, p: 4.84e-07
AATTTTT|TTTTGTCTCAC|AAAATTT (JC3V2_0_01954) in sense dir., at pos. -91, p: 4.84e-07
CACTTTT|TTTTATCTCAC|TCTGTTC (JC2V2_0_01441) in sense dir., at pos. -46, p: 1.1e-06
This motif matches the following known binding sites:
  • MOUSE$IGLL_04 - Ig-lambda (immunoglobulin lambda light chain)
  • MOUSE$TDT_01 - TdT (terminal deoxynucleotidyltransferase)
  • see details about this motif
    • Group gene expression

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