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Genes with similar expression patterns and regulatory domain structures

Description of the computationally inferred structure of gene regulatory sequence elements
There are 6 genes that match this regulatory region structure and are co-regulated in the yakA- pufA- gene expression data:

Motif appears at position -1000 to -721 relative to the ATG.

Regulatory region snapshot
BC4V2_0_01532 ( dictyBase Home >> Chromosome 4:3904314..3905262 >> Gene: DDB_G0285983 >> Regulatory Region )
apnA ( dictyBase Home >> Chromosome 4:3904314..3905262 >> Gene: DDB_G0285983 >> Regulatory Region )
geneDDB0220640 ( dictyBase Home >> Chromosome 4:3904314..3905262 >> Gene: DDB_G0285983 >> Regulatory Region )
geneDDB0233731 ( dictyBase Home >> Chromosome 4:3904314..3905262 >> Gene: DDB_G0285983 >> Regulatory Region )
geneDDB0237510 ( dictyBase Home >> Chromosome 4:3904314..3905262 >> Gene: DDB_G0285983 >> Regulatory Region )
rps27 ( dictyBase Home >> Chromosome 4:3904314..3905262 >> Gene: DDB_G0285983 >> Regulatory Region )

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
AACTATC|AACAAATCCC|AGTCAAT (geneDDB0237510) in sense dir., at pos. -976, p: 2.97e-07
TGTGGGA|AACAAACCCC|CCAACCT (BC4V2_0_01532) in sense dir., at pos. -968, p: 4.64e-08
GATGAGC|AGCAAACTCC|AAATAAT (apnA) in sense dir., at pos. -947, p: 4.14e-07
AAAAGAA|AACAAATCCC|GATCTCA (geneDDB0233731) in sense dir., at pos. -866, p: 2.97e-07
CATAAAA|AGAAAACCCC|CTGTCAA (rps27) in nonsense dir., at pos. -850, p: 4.14e-07
TAACAAA|AGCAAACCAC|CTTTTTT (geneDDB0220640) in nonsense dir., at pos. -731, p: 4.14e-07
This motif matches the following known binding sites:
  • MAIZE$ADH11S_06 - Adh1-1S (alcohol dehydrogenase 1, 1S allele), bound by: GCBP-1, Sp1
  • RICE$GLUB1_03 - GluB-1 (glutelin B-1), bound by: MYB5
  • see details about this motif
    • Group gene expression

    Here you can see all gene expression profiles data for all genes in this group.


    Query for a group of genes. Learn about how the analysis was done.
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