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Genes with similar expression patterns and regulatory domain structures

Description of the computationally inferred structure of gene regulatory sequence elements
There are 6 genes that match this regulatory region structure and are co-regulated in the yakA- pufA- gene expression data:

Motif appears in sense direction at position -600 to -481 relative to the ATG.

Regulatory region snapshot
BC4V2_0_00086 ( dictyBase Home >> Chromosome 4:206428..208370 >> Gene: DDB_G0283091 >> Regulatory Region )
BEC6V2_0_00061 ( dictyBase Home >> Chromosome 4:206428..208370 >> Gene: DDB_G0283091 >> Regulatory Region )
JC2V2_0_01348 ( dictyBase Home >> Chromosome 4:206428..208370 >> Gene: DDB_G0283091 >> Regulatory Region )
JC2V2_0_02453 ( dictyBase Home >> Chromosome 4:206428..208370 >> Gene: DDB_G0283091 >> Regulatory Region )
geneDDB0231388 ( dictyBase Home >> Chromosome 4:206428..208370 >> Gene: DDB_G0283091 >> Regulatory Region )
geneDDB0232942 ( dictyBase Home >> Chromosome 4:206428..208370 >> Gene: DDB_G0283091 >> Regulatory Region )

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
GTTTCAT|CCCACCT|ATTTCTT (JC2V2_0_02453) in sense dir., at pos. -596, p: 5.22e-07
AAAAAAA|CCCACCT|TTTTTTT (geneDDB0231388) in sense dir., at pos. -572, p: 5.22e-07
AAAAATG|CCCACCT|CAAAGTA (JC2V2_0_01348) in sense dir., at pos. -554, p: 5.22e-07
CCATTGC|CCCACCT|TTTGAAA (BEC6V2_0_00061) in sense dir., at pos. -554, p: 5.22e-07
ATACAAT|CCCACCT|CAACAAT (geneDDB0232942) in sense dir., at pos. -515, p: 5.22e-07
AAATATT|CCCACCT|TCATTAA (BC4V2_0_00086) in sense dir., at pos. -491, p: 5.22e-07
This motif matches the following known binding sites:
  • AS$AREB6_14 - artificial sequence., bound by: ZEB (1124 AA)
  • PV$PAL2_02 - PAL2 (phenylalanine ammonia-lyase 2), bound by: RF2a
  • see details about this motif
    • Group gene expression

    Here you can see all gene expression profiles data for all genes in this group.


    Query for a group of genes. Learn about how the analysis was done.
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