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Genes with similar expression patterns and regulatory domain structures

Description of the computationally inferred structure of gene regulatory sequence elements
There are 6 genes that match this regulatory region structure and are co-regulated in the yakA- gene expression data:

Motif appears at position -1000 to -41 relative to the ATG AND
motif appears at position 0 to 39 relative to .

Regulatory region snapshot
BC5V2_0_01445 ( dictyBase Home >> Chromosome 5:3697633..3699040 >> Gene: DDB_G0290133 >> Regulatory Region )
BEC6V2_0_00279 ( dictyBase Home >> Chromosome 5:3697633..3699040 >> Gene: DDB_G0290133 >> Regulatory Region )
JC2V2_0_01652 ( dictyBase Home >> Chromosome 5:3697633..3699040 >> Gene: DDB_G0290133 >> Regulatory Region )
JC3V2_0_02458 ( dictyBase Home >> Chromosome 5:3697633..3699040 >> Gene: DDB_G0290133 >> Regulatory Region )
geneDDB0220498 ( dictyBase Home >> Chromosome 5:3697633..3699040 >> Gene: DDB_G0290133 >> Regulatory Region )
rcnA ( dictyBase Home >> Chromosome 5:3697633..3699040 >> Gene: DDB_G0290133 >> Regulatory Region )

Detailed description of sequence elements (putative binding sites)
Motif appears at these position(s): 
TATTGGT|CACCCTCCATC|ATCGAAT (BC5V2_0_01445) in nonsense dir., at pos. -966, p: 8.33e-07
ATTGAAT|CACCCACCCTC|GAATTTA (BEC6V2_0_00279) in nonsense dir., at pos. -833, p: 8.33e-07
CACCACC|CACCCACCATC|TACCTCC (geneDDB0220498) in nonsense dir., at pos. -792, p: 4.33e-08
TTTTTAA|CACCCACCATC|ATATGAT (geneDDB0220498) in sense dir., at pos. -354, p: 4.33e-08
AACGGTA|CACCCACCCTC|ACATTTT (rcnA) in sense dir., at pos. -278, p: 8.33e-07
AAGATTA|CACCCACCTTC|TTACATT (JC2V2_0_01652) in nonsense dir., at pos. -179, p: 1.73e-07
TTATATC|CACCCGCCACC|ATAATAA (JC3V2_0_02458) in sense dir., at pos. -54, p: 5.71e-07

This motif does not match any known binding sites.

Motif appears at these position(s): 
TATTGGT|CACCCTCC|ATCATCG (BC5V2_0_01445) in nonsense dir., at pos. -963, p: 1.78e-07
ATTGAAT|CACCCACC|CTCGAAT (BEC6V2_0_00279) in nonsense dir., at pos. -830, p: 9.68e-08
TTTTTAA|CACCCACC|ATCATAT (geneDDB0220498) in sense dir., at pos. -354, p: 9.68e-08
AACGGTA|CACCCACC|CTCACAT (rcnA) in sense dir., at pos. -278, p: 9.68e-08
AAGATTA|CACCCACC|TTCTTAC (JC2V2_0_01652) in nonsense dir., at pos. -176, p: 9.68e-08
TTATATC|CACCCGCC|ACCATAA (JC3V2_0_02458) in sense dir., at pos. -54, p: 1.51e-08
This motif matches the following known binding sites:
  • CHICK$ADG_04 - GLOB-AD (alphaD-globin)
  • MOUSE$TK_04 - tk (thymidine kinase, cytoplasmic), bound by: Egr-1
  • see details about this motif
    • Group gene expression

    Here you can see all gene expression profiles data for all genes in this group.


    Query for a group of genes. Learn about how the analysis was done.
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